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    LOC117933449 ABC transporter F family member 3 [ Vitis riparia (riverbank grape) ]

    Gene ID: 117933449, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC117933449
    Gene description
    ABC transporter F family member 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis riparia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC117933449 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current EGFV_Vit.rip_1.0 (GCF_004353265.1) 2 NC_048432.1 (17859417..17869237)

    Chromosome 2 - NC_048432.1Genomic Context describing neighboring genes Neighboring gene asparagine--tRNA ligase, cytoplasmic 3-like Neighboring gene uncharacterized LOC117930837 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene glutamine-dependent NAD(+) synthetase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048432.1 Chromosome 2 Reference EGFV_Vit.rip_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter F family member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vitis riparia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EGFV_Vit.rip_1.0 Primary Assembly

    Genomic

    1. NC_048432.1 Reference EGFV_Vit.rip_1.0 Primary Assembly

      Range
      17859417..17869237
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034854809.1 → XP_034710700.1  ABC transporter F family member 3

      Conserved Domains (1) summary
      PLN03073
      Location:1 → 715
      PLN03073; ABC transporter F family; Provisional
    Nucleotide Protein
    Heading Accession and Version

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