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    EFNB2 ephrin B2 [ Zootoca vivipara (common lizard) ]

    Gene ID: 118084941, updated on 20-Mar-2024

    Summary

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    Gene symbol
    EFNB2
    Gene description
    ephrin B2
    See related
    EnsemblRapid:ENSZVIG00000003687
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zootoca vivipara
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca
    Orthologs
    human mouse all
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    Genomic context

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    See EFNB2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current rZooViv1.1 (GCF_963506605.1) 4 NC_083279.1 (22930569..22984312, complement)
    100 previous assembly UG_Zviv_1 (GCF_011800845.1) Linkage Group LG5 NC_048609.1 (77366322..77419716)

    Chromosome 4 - NC_083279.1Genomic Context describing neighboring genes Neighboring gene protein-lysine methyltransferase METTL21E Neighboring gene solute carrier family 10 member 2 Neighboring gene arginine and glutamate rich 1 Neighboring gene NALCN channel auxiliary factor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ephrin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in blood vessel morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ephrin receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ephrin-B2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_963506605.1-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rZooViv1.1

    Genomic

    1. NC_083279.1 Reference rZooViv1.1

      Range
      22930569..22984312 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035115092.2 → XP_034970983.1  ephrin-B2 isoform X2

      Conserved Domains (1) summary
      cd10426
      Location:167 → 303
      Ephrin-B_Ectodomain; Ectodomain of Ephrin B

    2. XM_035115091.2 → XP_034970982.1  ephrin-B2 isoform X1

      Related
      ENSZVIP00000004904.1
      Conserved Domains (1) summary
      cd10426
      Location:167 → 303
      Ephrin-B_Ectodomain; Ectodomain of Ephrin B
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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