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    TCF4 transcription factor 4 [ Oxyura jamaicensis (ruddy duck) ]

    Gene ID: 118156764, updated on 20-Mar-2024

    Summary

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    Gene symbol
    TCF4
    Gene description
    transcription factor 4
    See related
    EnsemblRapid:ENSOJMG00000015172
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oxyura jamaicensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Oxyura
    Orthologs
    human mouse all
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    Genomic context

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    See TCF4 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    100 current BPBGC_Ojam_1.0 (GCF_011077185.1) Z NC_048926.1 (954136..1156686)

    Chromosome Z - NC_048926.1Genomic Context describing neighboring genes Neighboring gene thioredoxin like 1 Neighboring gene uncharacterized LOC118156649 Neighboring gene coiled-coil domain containing 68 Neighboring gene RAB27B, member RAS oncogene family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048926.1 Chromosome Z Reference BPBGC_Ojam_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oxyura jamaicensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BPBGC_Ojam_1.0

    Genomic

    1. NC_048926.1 Reference BPBGC_Ojam_1.0

      Range
      954136..1156686
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035310982.1 → XP_035166873.1  transcription factor 4 isoform X1

      Conserved Domains (1) summary
      cd18945
      Location:562 → 646
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    2. XM_035310981.1 → XP_035166872.1  transcription factor 4 isoform X1

      Related
      ENSOJMP00000024243.1, ENSOJMT00000025380.1
      Conserved Domains (1) summary
      cd18945
      Location:562 → 646
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    3. XM_035310985.1 → XP_035166876.1  transcription factor 4 isoform X7

      Conserved Domains (1) summary
      cd18945
      Location:538 → 622
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    4. XM_035310980.1 → XP_035166871.1  transcription factor 4 isoform X1

      Conserved Domains (1) summary
      cd18945
      Location:562 → 646
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    5. XM_035310976.1 → XP_035166867.1  transcription factor 4 isoform X2

      Conserved Domains (1) summary
      cd18945
      Location:580 → 664
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    6. XM_035310974.1 → XP_035166865.1  transcription factor 4 isoform X1

      Conserved Domains (1) summary
      cd18945
      Location:562 → 646
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    7. XM_035310975.1 → XP_035166866.1  transcription factor 4 isoform X1

      Conserved Domains (1) summary
      cd18945
      Location:562 → 646
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    8. XM_035310973.1 → XP_035166864.1  transcription factor 4 isoform X1

      Related
      ENSOJMP00000024205.1, ENSOJMT00000025333.1
      Conserved Domains (1) summary
      cd18945
      Location:562 → 646
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    9. XM_035310978.1 → XP_035166869.1  transcription factor 4 isoform X4

      Conserved Domains (1) summary
      cd18945
      Location:558 → 642
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    10. XM_035310977.1 → XP_035166868.1  transcription factor 4 isoform X3

      Conserved Domains (1) summary
      cd18945
      Location:561 → 645
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    11. XM_035310979.1 → XP_035166870.1  transcription factor 4 isoform X5

      Conserved Domains (1) summary
      cd18945
      Location:557 → 641
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    12. XM_035310986.1 → XP_035166877.1  transcription factor 4 isoform X8

      Conserved Domains (1) summary
      cd18945
      Location:510 → 594
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    13. XM_035310988.1 → XP_035166879.1  transcription factor 4 isoform X9

      Conserved Domains (1) summary
      cd18945
      Location:509 → 593
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    14. XM_035310984.1 → XP_035166875.1  transcription factor 4 isoform X7

      Conserved Domains (1) summary
      cd18945
      Location:538 → 622
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    15. XM_035310990.1 → XP_035166881.1  transcription factor 4 isoform X11

      Related
      ENSOJMP00000024158.1, ENSOJMT00000025286.1
      Conserved Domains (1) summary
      cd18945
      Location:485 → 569
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    16. XM_035310994.1 → XP_035166885.1  transcription factor 4 isoform X15

      Conserved Domains (1) summary
      cd18945
      Location:543 → 627
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    17. XM_035310983.1 → XP_035166874.1  transcription factor 4 isoform X6

      Conserved Domains (1) summary
      cd18945
      Location:547 → 631
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    18. XM_035310989.1 → XP_035166880.1  transcription factor 4 isoform X10

      Conserved Domains (1) summary
      cd18945
      Location:494 → 578
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    19. XM_035310993.1 → XP_035166884.1  transcription factor 4 isoform X14

      Conserved Domains (1) summary
      cd18945
      Location:397 → 481
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    20. XM_035310992.1 → XP_035166883.1  transcription factor 4 isoform X13

      Conserved Domains (1) summary
      cd18945
      Location:398 → 482
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    21. XM_035310995.1 → XP_035166886.1  transcription factor 4 isoform X16

      Conserved Domains (1) summary
      cd18945
      Location:401 → 485
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

    22. XM_035310991.1 → XP_035166882.1  transcription factor 4 isoform X12

      Related
      ENSOJMP00000024099.1, ENSOJMT00000025204.1
      Conserved Domains (1) summary
      cd18945
      Location:402 → 486
      bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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