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    LOC118234940 E3 ubiquitin-protein ligase UBR5-like [ Anguilla anguilla (European eel) ]

    Gene ID: 118234940, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC118234940
    Gene description
    E3 ubiquitin-protein ligase UBR5-like
    See related
    EnsemblRapid:ENSAANG00010002261
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anguilla anguilla
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Anguilliformes; Anguillidae; Anguilla
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    Genomic context

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    See LOC118234940 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    59
    Annotation release Status Assembly Chr Location
    100 current fAngAng1.pri (GCF_013347855.1) 1 NC_049201.1 (49601862..49662289)

    Chromosome 1 - NC_049201.1Genomic Context describing neighboring genes Neighboring gene antizyme inhibitor 1-like Neighboring gene Krueppel-like factor 10 Neighboring gene uncharacterized LOC118214989 Neighboring gene protein LYRIC-like Neighboring gene lysosomal-associated transmembrane protein 4B-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_049201.1 Chromosome 1 Reference fAngAng1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase UBR5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Anguilla anguilla Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAngAng1.pri Primary Assembly

    Genomic

    1. NC_049201.1 Reference fAngAng1.pri Primary Assembly

      Range
      49601862..49662289
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035431826.1 → XP_035287717.1  E3 ubiquitin-protein ligase UBR5-like isoform X1

      Conserved Domains (4) summary
      smart00396
      Location:1206 → 1273
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      smart00517
      Location:2430 → 2493
      PolyA; C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein
      cd14423
      Location:211 → 257
      CUE_UBR5; CUE domain found in E3 ubiquitin-protein ligase UBR5 and similar proteins
      cl27008
      Location:2543 → 2838
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    2. XM_035431835.1 → XP_035287726.1  E3 ubiquitin-protein ligase UBR5-like isoform X2

      Conserved Domains (4) summary
      smart00396
      Location:1206 → 1273
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      smart00517
      Location:2430 → 2493
      PolyA; C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein
      cd14423
      Location:211 → 257
      CUE_UBR5; CUE domain found in E3 ubiquitin-protein ligase UBR5 and similar proteins
      cl27008
      Location:2542 → 2837
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    3. XM_035431854.1 → XP_035287745.1  E3 ubiquitin-protein ligase UBR5-like isoform X5

      Conserved Domains (4) summary
      smart00396
      Location:1206 → 1273
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      smart00517
      Location:2420 → 2483
      PolyA; C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein
      cd14423
      Location:211 → 257
      CUE_UBR5; CUE domain found in E3 ubiquitin-protein ligase UBR5 and similar proteins
      cl27008
      Location:2533 → 2828
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    4. XM_035431862.1 → XP_035287753.1  E3 ubiquitin-protein ligase UBR5-like isoform X6

      Conserved Domains (4) summary
      smart00396
      Location:1206 → 1273
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      smart00517
      Location:2419 → 2482
      PolyA; C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein
      cd14423
      Location:211 → 257
      CUE_UBR5; CUE domain found in E3 ubiquitin-protein ligase UBR5 and similar proteins
      cl27008
      Location:2532 → 2827
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    5. XM_035431888.1 → XP_035287779.1  E3 ubiquitin-protein ligase UBR5-like isoform X9

      Conserved Domains (4) summary
      smart00396
      Location:1206 → 1273
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      smart00517
      Location:2409 → 2472
      PolyA; C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein
      cd14423
      Location:211 → 257
      CUE_UBR5; CUE domain found in E3 ubiquitin-protein ligase UBR5 and similar proteins
      cl27008
      Location:2522 → 2817
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    6. XM_035431844.1 → XP_035287735.1  E3 ubiquitin-protein ligase UBR5-like isoform X3

      Conserved Domains (4) summary
      smart00396
      Location:1206 → 1273
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      smart00517
      Location:2425 → 2488
      PolyA; C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein
      cd14423
      Location:211 → 257
      CUE_UBR5; CUE domain found in E3 ubiquitin-protein ligase UBR5 and similar proteins
      cl27008
      Location:2538 → 2833
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    7. XM_035431870.1 → XP_035287761.1  E3 ubiquitin-protein ligase UBR5-like isoform X7

      Conserved Domains (4) summary
      smart00396
      Location:1206 → 1273
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      smart00517
      Location:2414 → 2477
      PolyA; C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein
      cd14423
      Location:211 → 257
      CUE_UBR5; CUE domain found in E3 ubiquitin-protein ligase UBR5 and similar proteins
      cl27008
      Location:2527 → 2822
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    8. XM_035431878.1 → XP_035287769.1  E3 ubiquitin-protein ligase UBR5-like isoform X8

      Related
      ENSAANP00010007388.1, ENSAANT00010007691.1
      Conserved Domains (4) summary
      smart00396
      Location:1206 → 1273
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      smart00517
      Location:2414 → 2477
      PolyA; C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein
      cd14423
      Location:211 → 257
      CUE_UBR5; CUE domain found in E3 ubiquitin-protein ligase UBR5 and similar proteins
      cl27008
      Location:2526 → 2821
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    9. XM_035431916.1 → XP_035287807.1  E3 ubiquitin-protein ligase UBR5-like isoform X12

      Conserved Domains (4) summary
      smart00396
      Location:1154 → 1221
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      smart00517
      Location:2378 → 2441
      PolyA; C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein
      cd14423
      Location:211 → 257
      CUE_UBR5; CUE domain found in E3 ubiquitin-protein ligase UBR5 and similar proteins
      cl27008
      Location:2491 → 2786
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    10. XM_035431848.1 → XP_035287739.1  E3 ubiquitin-protein ligase UBR5-like isoform X4

      Conserved Domains (4) summary
      smart00396
      Location:1200 → 1267
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      smart00517
      Location:2424 → 2487
      PolyA; C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein
      cd14423
      Location:211 → 257
      CUE_UBR5; CUE domain found in E3 ubiquitin-protein ligase UBR5 and similar proteins
      cl27008
      Location:2537 → 2832
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    11. XM_035431898.1 → XP_035287789.1  E3 ubiquitin-protein ligase UBR5-like isoform X10

      Related
      ENSAANP00010007453.1, ENSAANT00010007762.1
      Conserved Domains (4) summary
      smart00396
      Location:1200 → 1267
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      smart00517
      Location:2408 → 2471
      PolyA; C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein
      cd14423
      Location:211 → 257
      CUE_UBR5; CUE domain found in E3 ubiquitin-protein ligase UBR5 and similar proteins
      cl27008
      Location:2521 → 2816
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    12. XM_035431907.1 → XP_035287798.1  E3 ubiquitin-protein ligase UBR5-like isoform X11

      Conserved Domains (4) summary
      smart00396
      Location:1166 → 1233
      ZnF_UBR1; Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway
      smart00517
      Location:2390 → 2453
      PolyA; C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein
      cd14423
      Location:171 → 217
      CUE_UBR5; CUE domain found in E3 ubiquitin-protein ligase UBR5 and similar proteins
      cl27008
      Location:2503 → 2798
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    Nucleotide Protein
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