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    ccnt1 cyclin T1 [ Morone saxatilis (striped sea-bass) ]

    Gene ID: 118324396, updated on 20-Mar-2024

    Summary

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    Gene symbol
    ccnt1
    Gene description
    cyclin T1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Morone saxatilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Moronidae; Morone
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human zebrafish all
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    Genomic context

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    See ccnt1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current NCSU_SB_2.0 (GCF_004916995.1) Unplaced Scaffold NW_023339707.1 (25055160..25059738)

    NW_023339707.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118324171 Neighboring gene uncharacterized LOC118324974 Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene KAT8 regulatory NSL complex subunit 2 Neighboring gene NCK-associated protein 5-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023339707 Unplaced Scaffold Reference NCSU_SB_2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome annotation and marker discovery in white bass (Morone chrysops) and striped bass (Morone saxatilis). Li C, et al. Anim Genet, 2014 Dec. PMID 25160849
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription, elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cyclin/CDK positive transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-T1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Morone saxatilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NCSU_SB_2.0 Primary Assembly

    Genomic

    1. NW_023339707.1 Reference NCSU_SB_2.0 Primary Assembly

      Range
      25055160..25059738
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035656717.1 → XP_035512610.1  cyclin-T1 isoform X1

      Conserved Domains (2) summary
      cd20595
      Location:14 → 151
      CYCLIN_CCNT1_rpt1; first cyclin box found in cyclin-T1 (CCNT1)
      cd20597
      Location:155 → 266
      CYCLIN_CCNT1_rpt2; second cyclin box found in cyclin-T1 (CCNT1)

    2. XM_035656718.1 → XP_035512611.1  cyclin-T1 isoform X2

      Conserved Domains (2) summary
      cd20595
      Location:14 → 151
      CYCLIN_CCNT1_rpt1; first cyclin box found in cyclin-T1 (CCNT1)
      cd20597
      Location:155 → 263
      CYCLIN_CCNT1_rpt2; second cyclin box found in cyclin-T1 (CCNT1)
    Nucleotide Protein
    Heading Accession and Version

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