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    Asprv1 aspartic peptidase retroviral like 1 [ Onychomys torridus (southern grasshopper mouse) ]

    Gene ID: 118580112, updated on 20-Mar-2024

    Summary

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    Gene symbol
    Asprv1
    Gene description
    aspartic peptidase retroviral like 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Onychomys torridus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Onychomys
    Orthologs
    human mouse all
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    Genomic context

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    See Asprv1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current mOncTor1.1 (GCF_903995425.1) 3 NC_050445.1 (111784016..111790670)

    Chromosome 3 - NC_050445.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118579215 Neighboring gene uncharacterized LOC118579216 Neighboring gene MAX dimerization protein 1 Neighboring gene small nuclear ribonucleoprotein U4/U6.U5 subunit 27

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_050445.1 Chromosome 3 Reference mOncTor1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: retroviral-like aspartic protease 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Onychomys torridus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mOncTor1.1

    Genomic

    1. NC_050445.1 Reference mOncTor1.1

      Range
      111784016..111790670
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036181909.1 → XP_036037802.1  LOW QUALITY PROTEIN: retroviral-like aspartic protease 1

      Conserved Domains (1) summary
      cd00303
      Location:280 → 372
      retropepsin_like; Retropepsins; pepsin-like aspartate proteases
    Nucleotide Protein
    Heading Accession and Version

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