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    ddx18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [ Megalops cyprinoides (Indo-Pacific tarpon) ]

    Gene ID: 118785633, updated on 20-Mar-2024

    Summary

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    Gene symbol
    ddx18
    Gene description
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
    See related
    EnsemblRapid:ENSMCNG00005024147
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Megalops cyprinoides
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Elopiformes; Megalopidae; Megalops
    Orthologs
    human zebrafish all
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    Genomic context

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    See ddx18 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current fMegCyp1.pri (GCF_013368585.1) 11 NC_050593.1 (4249682..4260420)

    Chromosome 11 - NC_050593.1Genomic Context describing neighboring genes Neighboring gene inactive dipeptidyl peptidase 10-like Neighboring gene inactive dipeptidyl peptidase 10-like Neighboring gene 5-hydroxytryptamine receptor 5A-like Neighboring gene coiled-coil domain containing 93

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_050593.1 Chromosome 11 Reference fMegCyp1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase DDX18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Megalops cyprinoides Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fMegCyp1.pri Primary Assembly

    Genomic

    1. NC_050593.1 Reference fMegCyp1.pri Primary Assembly

      Range
      4249682..4260420
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036540450.1 → XP_036396343.1  ATP-dependent RNA helicase DDX18

      Related
      ENSMCNP00005063291.1, ENSMCNT00005064398.1
      Conserved Domains (3) summary
      PTZ00110
      Location:189 → 589
      PTZ00110; helicase; Provisional
      cd17942
      Location:205 → 402
      DEADc_DDX18; DEAD-box helicase domain of DEAD box protein 18
      pfam13959
      Location:577 → 634
      DUF4217; Domain of unknown function (DUF4217)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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