U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LRFN5 leucine rich repeat and fibronectin type III domain containing 5 [ Trichosurus vulpecula (common brushtail) ]

    Gene ID: 118843190, updated on 20-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LRFN5
    Gene description
    leucine rich repeat and fibronectin type III domain containing 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trichosurus vulpecula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phalangeridae; Trichosurus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LRFN5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current mTriVul1.pri (GCF_011100635.1) 3 NC_050575.1 (44818308..44844265)

    Chromosome 3 - NC_050575.1Genomic Context describing neighboring genes Neighboring gene claudin-6-like Neighboring gene peroxisome biogenesis factor 10-like Neighboring gene WW domain-containing transcription regulator protein 1-like Neighboring gene MAM domain containing glycosylphosphatidylinositol anchor 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_050575.1 Chromosome 3 Reference mTriVul1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    leucine-rich repeat and fibronectin type-III domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Trichosurus vulpecula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mTriVul1.pri Primary Assembly

    Genomic

    1. NC_050575.1 Reference mTriVul1.pri Primary Assembly

      Range
      44818308..44844265
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036750674.1 → XP_036606569.1  leucine-rich repeat and fibronectin type-III domain-containing protein 5 isoform X2

      Conserved Domains (5) summary
      sd00033
      Location:53 → 76
      LRR_RI; leucine-rich repeat [structural motif]
      cd05764
      Location:287 → 374
      IgI_SALM5_like; Immunoglobulin domain of human Synaptic Adhesion-Like Molecule 5 (SALM5) and similar proteins; member of the I-set of IgSF domains
      cd21340
      Location:56 → 211
      PPP1R42; protein phosphatase 1 regulatory subunit 42
      cl15307
      Location:240 → 272
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
      cl21522
      Location:422 → 495
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    2. XM_036750675.1 → XP_036606570.1  leucine-rich repeat and fibronectin type-III domain-containing protein 5 isoform X3

      Conserved Domains (4) summary
      sd00033
      Location:53 → 76
      LRR_RI; leucine-rich repeat [structural motif]
      cd05764
      Location:287 → 374
      IgI_SALM5_like; Immunoglobulin domain of human Synaptic Adhesion-Like Molecule 5 (SALM5) and similar proteins; member of the I-set of IgSF domains
      cd21340
      Location:56 → 211
      PPP1R42; protein phosphatase 1 regulatory subunit 42
      cl15307
      Location:240 → 272
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    3. XM_036750673.1 → XP_036606568.1  leucine-rich repeat and fibronectin type-III domain-containing protein 5 isoform X1

      Conserved Domains (5) summary
      sd00033
      Location:53 → 76
      LRR_RI; leucine-rich repeat [structural motif]
      cd05764
      Location:287 → 374
      IgI_SALM5_like; Immunoglobulin domain of human Synaptic Adhesion-Like Molecule 5 (SALM5) and similar proteins; member of the I-set of IgSF domains
      cd21340
      Location:56 → 211
      PPP1R42; protein phosphatase 1 regulatory subunit 42
      cl15307
      Location:240 → 272
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
      cl21522
      Location:422 → 495
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.