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    dhx9 DEAH (Asp-Glu-Ala-His) box helicase 9 [ Acanthopagrus latus (yellowfin seabream) ]

    Gene ID: 119010639, updated on 21-Mar-2024

    Summary

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    Gene symbol
    dhx9
    Gene description
    DEAH (Asp-Glu-Ala-His) box helicase 9
    See related
    EnsemblRapid:ENSALTG00010027656
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acanthopagrus latus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
    Orthologs
    human zebrafish all
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    Genomic context

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    See dhx9 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    100 current fAcaLat1.1 (GCF_904848185.1) 21 NC_051059.1 (27644661..27656153, complement)

    Chromosome 21 - NC_051059.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 569-like Neighboring gene laminin, gamma 1 Neighboring gene laminin, gamma 2 Neighboring gene uncharacterized LOC119011477 Neighboring gene nicotinamide nucleotide adenylyltransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_051059.1 Chromosome 21 Reference fAcaLat1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5' DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables 3'-5' DNA/RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAcaLat1.1 Primary Assembly

    Genomic

    1. NC_051059.1 Reference fAcaLat1.1 Primary Assembly

      Range
      27644661..27656153 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037082948.1 → XP_036938843.1  ATP-dependent RNA helicase A

      Related
      ENSALTP00010071661.1, ENSALTT00010080405.1
      Conserved Domains (4) summary
      COG1643
      Location:402 → 1077
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd17972
      Location:356 → 589
      DEXHc_DHX9; DEXH-box helicase domain of DEAH-box helicase 9
      cd19854
      Location:3 → 71
      DSRM_DHX9_rpt1; first double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
      cd19855
      Location:204 → 278
      DSRM_DHX9_rpt2; second double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins

    2. XM_037082950.1 → XP_036938845.1  ATP-dependent RNA helicase A

      Conserved Domains (4) summary
      COG1643
      Location:402 → 1077
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd17972
      Location:356 → 589
      DEXHc_DHX9; DEXH-box helicase domain of DEAH-box helicase 9
      cd19854
      Location:3 → 71
      DSRM_DHX9_rpt1; first double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
      cd19855
      Location:204 → 278
      DSRM_DHX9_rpt2; second double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins

    3. XM_037082949.1 → XP_036938844.1  ATP-dependent RNA helicase A

      Related
      ENSALTP00010071657.1, ENSALTT00010080401.1
      Conserved Domains (4) summary
      COG1643
      Location:402 → 1077
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd17972
      Location:356 → 589
      DEXHc_DHX9; DEXH-box helicase domain of DEAH-box helicase 9
      cd19854
      Location:3 → 71
      DSRM_DHX9_rpt1; first double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
      cd19855
      Location:204 → 278
      DSRM_DHX9_rpt2; second double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins

    4. XM_037082952.1 → XP_036938847.1  ATP-dependent RNA helicase A

      Conserved Domains (4) summary
      COG1643
      Location:402 → 1077
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd17972
      Location:356 → 589
      DEXHc_DHX9; DEXH-box helicase domain of DEAH-box helicase 9
      cd19854
      Location:3 → 71
      DSRM_DHX9_rpt1; first double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
      cd19855
      Location:204 → 278
      DSRM_DHX9_rpt2; second double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins

    5. XM_037082951.1 → XP_036938846.1  ATP-dependent RNA helicase A

      Conserved Domains (4) summary
      COG1643
      Location:402 → 1077
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd17972
      Location:356 → 589
      DEXHc_DHX9; DEXH-box helicase domain of DEAH-box helicase 9
      cd19854
      Location:3 → 71
      DSRM_DHX9_rpt1; first double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
      cd19855
      Location:204 → 278
      DSRM_DHX9_rpt2; second double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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