U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC119163616 titin-like [ Rhipicephalus microplus (southern cattle tick) ]

    Gene ID: 119163616, updated on 26-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC119163616
    Gene description
    titin-like
    See related
    VectorBase:LOC119163616; EnsemblRapid:LOC119163616
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhipicephalus microplus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Rhipicephalus; Boophilus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC119163616 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current ASM1333972v1 (GCF_013339725.1) 3 NC_051167.1 (114803724..114859957, complement)

    Chromosome 3 - NC_051167.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119163614 Neighboring gene ubiquitin conjugating enzyme E2H Neighboring gene myotubularin-related protein 14-like Neighboring gene uncharacterized LOC119163619 Neighboring gene putative nuclease HARBI1 Neighboring gene uncharacterized LOC119163621

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_051167.1 Chromosome 3 Reference ASM1333972v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    bromodomain-containing protein 4-like; titin-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Rhipicephalus microplus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1333972v1 Primary Assembly

    Genomic

    1. NC_051167.1 Reference ASM1333972v1 Primary Assembly

      Range
      114803724..114859957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037415655.1 → XP_037271552.1  titin-like isoform X3

      UniProtKB/TrEMBL
      A0A9J6EBT8
      Related
      XP_037271552.1, XM_037415655.1
      Conserved Domains (5) summary
      cd13389
      Location:1335 → 1446
      PH1_FGD5_FGD6; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6, N-terminal Pleckstrin Homology (PH) domain
      cl28890
      Location:1467 → 1528
      FYVE_like_SF; FYVE domain like superfamily
      pfam00621
      Location:1129 → 1312
      RhoGEF; RhoGEF domain
      NF033845
      Location:787 → 1023
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
      cl17171
      Location:1573 → 1662
      PH-like; Pleckstrin homology-like domain

    2. XM_037415654.1 → XP_037271551.1  bromodomain-containing protein 4-like isoform X2

      UniProtKB/TrEMBL
      A0A9J6EBT8
      Related
      XP_037271551.1, XM_037415654.1
      Conserved Domains (5) summary
      cd13389
      Location:1376 → 1487
      PH1_FGD5_FGD6; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6, N-terminal Pleckstrin Homology (PH) domain
      cl28890
      Location:1508 → 1569
      FYVE_like_SF; FYVE domain like superfamily
      pfam00621
      Location:1170 → 1353
      RhoGEF; RhoGEF domain
      NF033845
      Location:829 → 1155
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
      cl17171
      Location:1614 → 1703
      PH-like; Pleckstrin homology-like domain

    3. XM_037415653.1 → XP_037271550.1  bromodomain-containing protein 4-like isoform X1

      UniProtKB/TrEMBL
      A0A9J6EBT8
      Related
      XP_037271550.1, XM_037415653.1
      Conserved Domains (5) summary
      cd13389
      Location:1377 → 1488
      PH1_FGD5_FGD6; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6, N-terminal Pleckstrin Homology (PH) domain
      cl28890
      Location:1509 → 1570
      FYVE_like_SF; FYVE domain like superfamily
      pfam00621
      Location:1171 → 1354
      RhoGEF; RhoGEF domain
      NF033845
      Location:829 → 1065
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
      cl17171
      Location:1615 → 1704
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases