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    LOC119589712 zinc metalloproteinase nas-4-like [ Penaeus monodon (black tiger shrimp) ]

    Gene ID: 119589712, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC119589712
    Gene description
    zinc metalloproteinase nas-4-like
    See related
    EnsemblRapid:LOC119589712
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Penaeus monodon
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC119589712 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current NSTDA_Pmon_1 (GCF_015228065.1) 26 NC_051411.1 (101166..102570, complement)

    Chromosome 26 - NC_051411.1Genomic Context describing neighboring genes Neighboring gene zinc metalloproteinase nas-4-like Neighboring gene gamma-aminobutyric acid receptor subunit delta-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_051411.1 Chromosome 26 Reference NSTDA_Pmon_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc metalloproteinase nas-4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Penaeus monodon Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NSTDA_Pmon_1 Primary Assembly

    Genomic

    1. NC_051411.1 Reference NSTDA_Pmon_1 Primary Assembly

      Range
      101166..102570 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037938296.1 → XP_037794224.1  zinc metalloproteinase nas-4-like

      Related
      XP_037794224.1, XM_037938296.1
      Conserved Domains (3) summary
      PLN00052
      Location:345 → 405
      PLN00052; prolyl 4-hydroxylase; Provisional
      smart00254
      Location:414 → 448
      ShKT; ShK toxin domain
      cd04280
      Location:130 → 309
      ZnMc_astacin_like; Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to ...
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases