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    PLXNA1 plexin A1 [ Motacilla alba alba ]

    Gene ID: 119705911, updated on 3-Aug-2024

    Summary

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    Gene symbol
    PLXNA1
    Gene description
    plexin A1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Motacilla alba alba (sub-species: alba)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Motacillidae; Motacilla
    Orthologs
    human mouse all
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    Genomic context

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    See PLXNA1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    100 current Motacilla_alba_V1.0_pri (GCF_015832195.1) 12 NC_052027.1 (10897460..11013068, complement)

    Chromosome 12 - NC_052027.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon UAA) Neighboring gene uncharacterized LOC119705879 Neighboring gene uncharacterized LOC119705912 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 6 Neighboring gene transmembrane protein adipocyte associated 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052027.1 Chromosome 12 Reference Motacilla_alba_V1.0_pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of semaphorin receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plexin-A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Motacilla alba alba Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Motacilla_alba_V1.0_pri Primary Assembly

    Genomic

    1. NC_052027.1 Reference Motacilla_alba_V1.0_pri Primary Assembly

      Range
      10897460..11013068 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038148800.1 → XP_038004728.1  plexin-A1

      UniProtKB/TrEMBL
      A0A7K5C0S4
      Conserved Domains (9) summary
      cd11271
      Location:43 → 516
      Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1
      cd01179
      Location:963 → 1048
      IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01180
      Location:866 → 961
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01181
      Location:1050 → 1150
      IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:517 → 559
      PSI; Plexin repeat
      pfam01833
      Location:1152 → 1236
      TIG; IPT/TIG domain
      pfam08337
      Location:1320 → 1868
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:572 → 662
      TIG_plexin; TIG domain
      pfam18020
      Location:716 → 810
      TIG_2; TIG domain found in plexin

    2. XM_038148802.1 → XP_038004730.1  plexin-A1

      UniProtKB/TrEMBL
      A0A7K5C0S4
      Conserved Domains (9) summary
      cd11271
      Location:43 → 516
      Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1
      cd01179
      Location:963 → 1048
      IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01180
      Location:866 → 961
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01181
      Location:1050 → 1150
      IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:517 → 559
      PSI; Plexin repeat
      pfam01833
      Location:1152 → 1236
      TIG; IPT/TIG domain
      pfam08337
      Location:1320 → 1868
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:572 → 662
      TIG_plexin; TIG domain
      pfam18020
      Location:716 → 810
      TIG_2; TIG domain found in plexin

    3. XM_038148803.1 → XP_038004731.1  plexin-A1

      UniProtKB/TrEMBL
      A0A7K5C0S4
      Conserved Domains (9) summary
      cd11271
      Location:43 → 516
      Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1
      cd01179
      Location:963 → 1048
      IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01180
      Location:866 → 961
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01181
      Location:1050 → 1150
      IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:517 → 559
      PSI; Plexin repeat
      pfam01833
      Location:1152 → 1236
      TIG; IPT/TIG domain
      pfam08337
      Location:1320 → 1868
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:572 → 662
      TIG_plexin; TIG domain
      pfam18020
      Location:716 → 810
      TIG_2; TIG domain found in plexin

    4. XM_038148801.1 → XP_038004729.1  plexin-A1

      UniProtKB/TrEMBL
      A0A7K5C0S4
      Conserved Domains (9) summary
      cd11271
      Location:43 → 516
      Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1
      cd01179
      Location:963 → 1048
      IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01180
      Location:866 → 961
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01181
      Location:1050 → 1150
      IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:517 → 559
      PSI; Plexin repeat
      pfam01833
      Location:1152 → 1236
      TIG; IPT/TIG domain
      pfam08337
      Location:1320 → 1868
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:572 → 662
      TIG_plexin; TIG domain
      pfam18020
      Location:716 → 810
      TIG_2; TIG domain found in plexin
    Nucleotide Protein
    Heading Accession and Version

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