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    ptprt protein tyrosine phosphatase receptor type T [ Cyprinodon tularosa ]

    Gene ID: 119791451, updated on 12-Sep-2024

    Summary

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    Gene symbol
    ptprt
    Gene description
    protein tyrosine phosphatase receptor type T
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cyprinodon tularosa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
    Orthologs
    human zebrafish all
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    Genomic context

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    See ptprt in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    100 current ASM1607723v1 (GCF_016077235.1) Unplaced Scaffold NW_024039108.1 (11117..482794, complement)

    NW_024039108.1Genomic Context describing neighboring genes Neighboring gene R-spondin 4 Neighboring gene chromodomain helicase DNA binding protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024039108 Unplaced Scaffold Reference ASM1607723v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-type tyrosine-protein phosphatase T

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Cyprinodon tularosa Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1607723v1

    Genomic

    1. NW_024039108.1 Reference ASM1607723v1

      Range
      11117..482794 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038297556.1 → XP_038153484.1  receptor-type tyrosine-protein phosphatase T isoform X13

      Conserved Domains (8) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:942 → 1178
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1263 → 1468
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      pfam18861
      Location:656 → 767
      PTP_tm; Transmembrane domain of protein tyrosine phosphatase, receptor type J
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    2. XM_038297553.1 → XP_038153481.1  receptor-type tyrosine-protein phosphatase T isoform X11

      Conserved Domains (8) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:942 → 1181
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1266 → 1471
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      pfam18861
      Location:656 → 767
      PTP_tm; Transmembrane domain of protein tyrosine phosphatase, receptor type J
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    3. XM_038297554.1 → XP_038153482.1  receptor-type tyrosine-protein phosphatase T isoform X12

      Conserved Domains (8) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:952 → 1188
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1273 → 1478
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      pfam18861
      Location:656 → 767
      PTP_tm; Transmembrane domain of protein tyrosine phosphatase, receptor type J
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    4. XM_038297552.1 → XP_038153480.1  receptor-type tyrosine-protein phosphatase T isoform X10

      Conserved Domains (8) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:952 → 1191
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1276 → 1481
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      pfam18861
      Location:656 → 767
      PTP_tm; Transmembrane domain of protein tyrosine phosphatase, receptor type J
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    5. XM_038297551.1 → XP_038153479.1  receptor-type tyrosine-protein phosphatase T isoform X9

      Conserved Domains (8) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:953 → 1192
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1277 → 1482
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      pfam18861
      Location:656 → 767
      PTP_tm; Transmembrane domain of protein tyrosine phosphatase, receptor type J
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    6. XM_038297548.1 → XP_038153476.1  receptor-type tyrosine-protein phosphatase T isoform X6

      Conserved Domains (8) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:969 → 1208
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1293 → 1498
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      pfam18861
      Location:656 → 783
      PTP_tm; Transmembrane domain of protein tyrosine phosphatase, receptor type J
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    7. XM_038297550.1 → XP_038153478.1  receptor-type tyrosine-protein phosphatase T isoform X8

      Conserved Domains (8) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:956 → 1195
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1280 → 1485
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      pfam18861
      Location:656 → 770
      PTP_tm; Transmembrane domain of protein tyrosine phosphatase, receptor type J
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    8. XM_038297557.1 → XP_038153485.1  receptor-type tyrosine-protein phosphatase T isoform X14

      Conserved Domains (7) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:961 → 1197
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1282 → 1487
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    9. XM_038297549.1 → XP_038153477.1  receptor-type tyrosine-protein phosphatase T isoform X7

      Conserved Domains (7) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:961 → 1200
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1285 → 1490
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    10. XM_038297546.1 → XP_038153474.1  receptor-type tyrosine-protein phosphatase T isoform X4

      Conserved Domains (7) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:970 → 1209
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1294 → 1499
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    11. XM_038297558.1 → XP_038153486.1  receptor-type tyrosine-protein phosphatase T isoform X15

      Conserved Domains (7) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:971 → 1207
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1292 → 1497
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    12. XM_038297543.1 → XP_038153471.1  receptor-type tyrosine-protein phosphatase T isoform X2

      Conserved Domains (7) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:971 → 1210
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1295 → 1500
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    13. XM_038297547.1 → XP_038153475.1  receptor-type tyrosine-protein phosphatase T isoform X5

      Conserved Domains (7) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:972 → 1208
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1293 → 1498
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    14. XM_038297545.1 → XP_038153473.1  receptor-type tyrosine-protein phosphatase T isoform X3

      Conserved Domains (7) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:972 → 1210
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1295 → 1500
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain

    15. XM_038297542.1 → XP_038153470.1  receptor-type tyrosine-protein phosphatase T isoform X1

      Conserved Domains (7) summary
      smart00060
      Location:285 → 356
      FN3; Fibronectin type 3 domain
      smart00137
      Location:24 → 185
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      cd00063
      Location:386 → 476
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd14630
      Location:972 → 1211
      R-PTPc-T-1; catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1
      cd14634
      Location:1296 → 1501
      R-PTPc-T-2; PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2
      pfam00041
      Location:498 → 573
      fn3; Fibronectin type III domain
      cl11960
      Location:192 → 277
      Ig; Immunoglobulin domain
    Nucleotide Protein
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