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    Csdc2 cold shock domain containing C2 [ Arvicola amphibius (Eurasian water vole) ]

    Gene ID: 119823629, updated on 21-Mar-2024

    Summary

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    Gene symbol
    Csdc2
    Gene description
    cold shock domain containing C2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arvicola amphibius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
    Orthologs
    human mouse all
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    Genomic context

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    See Csdc2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current mArvAmp1.2 (GCF_903992535.2) 9 NC_052055.2 (40583742..40604129)
    100 previous assembly mArvAmp1.1 (GCF_903992535.1) 9 NC_052055.1 (22812978..22833365, complement)

    Chromosome 9 - NC_052055.2Genomic Context describing neighboring genes Neighboring gene PHD finger protein 5A Neighboring gene aconitase 2 Neighboring gene small nucleolar RNA U3 Neighboring gene RNA polymerase III subunit H Neighboring gene cytochrome P450 2D3-like Neighboring gene phosphomannomutase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: cold shock domain-containing protein C2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mArvAmp1.2

    Genomic

    1. NC_052055.2 Reference mArvAmp1.2

      Range
      40583742..40604129
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042055731.1 → XP_041911665.1  LOW QUALITY PROTEIN: cold shock domain-containing protein C2

      Conserved Domains (2) summary
      PRK07003
      Location:55 → 195
      PRK07003; DNA polymerase III subunit gamma/tau
      cd04458
      Location:199 → 263
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
    Nucleotide Protein
    Heading Accession and Version

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