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    LOC119861080 Krueppel-like factor 5 [ Dermochelys coriacea (leatherback sea turtle) ]

    Gene ID: 119861080, updated on 8-May-2024

    Summary

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    Gene symbol
    LOC119861080
    Gene description
    Krueppel-like factor 5
    See related
    EnsemblRapid:ENSDCOG00030001063
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dermochelys coriacea
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Dermochelyidae; Dermochelys
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    Genomic context

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    See LOC119861080 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current rDerCor1.pri.v4 (GCF_009764565.3) 9 NC_050076.1 (63452243..63531892, complement)
    100 previous assembly rDerCor1.pri.v3 (GCF_009764565.2) 9 NC_050076.1 (63452243..63500102, complement)

    Chromosome 9 - NC_050076.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein KCTD8-like Neighboring gene uncharacterized LOC122455725 Neighboring gene KLF transcription factor 8 Neighboring gene TNFAIP3-interacting protein 3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Krueppel-like factor 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Dermochelys coriacea Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rDerCor1.pri.v4

    Genomic

    1. NC_050076.1 Reference rDerCor1.pri.v4

      Range
      63452243..63531892 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038415569.2 → XP_038271497.1  Krueppel-like factor 5 isoform X2

      Related
      ENSDCOP00030002899.1, ENSDCOT00030003073.1
      Conserved Domains (4) summary
      COG5048
      Location:346 → 424
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:369 → 388
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:410 → 435
      zf-H2C2_2; Zinc-finger double domain
      cd21579
      Location:3 → 361
      KLF5_N; N-terminal domain of Kruppel-like factor 5

    2. XM_043492166.1 → XP_043348101.1  Krueppel-like factor 5 isoform X3

      Conserved Domains (2) summary
      COG5048
      Location:210 → 387
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:308 → 327
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_043492165.1 → XP_043348100.1  Krueppel-like factor 5 isoform X3

      Conserved Domains (2) summary
      COG5048
      Location:210 → 387
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:308 → 327
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_038415570.2 → XP_038271498.1  Krueppel-like factor 5 isoform X1

      Related
      ENSDCOP00030002904.1, ENSDCOT00030003078.1
      Conserved Domains (3) summary
      sd00017
      Location:354 → 373
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:395 → 420
      zf-H2C2_2; Zinc-finger double domain
      cd21579
      Location:3 → 346
      KLF5_N; N-terminal domain of Kruppel-like factor 5
    Nucleotide Protein
    Heading Accession and Version

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