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    ipo13 importin 13 [ Scyliorhinus canicula (smaller spotted catshark) ]

    Gene ID: 119964560, updated on 12-Sep-2024

    Summary

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    Gene symbol
    ipo13
    Gene description
    importin 13
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scyliorhinus canicula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
    Orthologs
    human zebrafish all
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    Genomic context

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    See ipo13 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current sScyCan1.1 (GCF_902713615.1) 4 NC_052149.1 (51090720..51305919, complement)

    Chromosome 4 - NC_052149.1Genomic Context describing neighboring genes Neighboring gene fizzy-related protein homolog Neighboring gene AP-1 complex subunit mu-1-like Neighboring gene uncharacterized LOC119964564 Neighboring gene armadillo like helical domain containing 1 Neighboring gene transmembrane protein 53

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052149.1 Chromosome 4 Reference sScyCan1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    importin-13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sScyCan1.1 Primary Assembly

    Genomic

    1. NC_052149.1 Reference sScyCan1.1 Primary Assembly

      Range
      51090720..51305919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038794211.1 → XP_038650139.1  importin-13 isoform X2

      Conserved Domains (6) summary
      smart00913
      Location:38 → 103
      IBN_N; Importin-beta N-terminal domain
      COG5101
      Location:25 → 642
      CRM1; Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
      pfam08389
      Location:110 → 255
      Xpo1; Exportin 1-like protein
      pfam18773
      Location:394 → 433
      Importin_rep; Importin 13 repeat
      pfam18786
      Location:576 → 619
      Importin_rep_2; Importin 13 repeat
      pfam18806
      Location:818 → 892
      Importin_rep_3; Importin 13 repeat

    2. XM_038794212.1 → XP_038650140.1  importin-13 isoform X3

      Conserved Domains (6) summary
      smart00913
      Location:38 → 103
      IBN_N; Importin-beta N-terminal domain
      COG5101
      Location:25 → 573
      CRM1; Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
      pfam08389
      Location:110 → 255
      Xpo1; Exportin 1-like protein
      pfam18773
      Location:415 → 454
      Importin_rep; Importin 13 repeat
      pfam18786
      Location:597 → 640
      Importin_rep_2; Importin 13 repeat
      pfam18806
      Location:791 → 865
      Importin_rep_3; Importin 13 repeat

    3. XM_038794210.1 → XP_038650138.1  importin-13 isoform X1

      Conserved Domains (6) summary
      smart00913
      Location:38 → 103
      IBN_N; Importin-beta N-terminal domain
      COG5101
      Location:25 → 663
      CRM1; Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
      pfam08389
      Location:110 → 255
      Xpo1; Exportin 1-like protein
      pfam18773
      Location:415 → 454
      Importin_rep; Importin 13 repeat
      pfam18786
      Location:597 → 640
      Importin_rep_2; Importin 13 repeat
      pfam18806
      Location:839 → 913
      Importin_rep_3; Importin 13 repeat

    RNA

    1. XR_005460326.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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