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    COL26A1 collagen type XXVI alpha 1 chain [ Crotalus tigris (Tiger rattlesnake) ]

    Gene ID: 120303981, updated on 21-Mar-2024

    Summary

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    Gene symbol
    COL26A1
    Gene description
    collagen type XXVI alpha 1 chain
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Crotalus tigris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
    Orthologs
    human mouse all
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    Genomic context

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    See COL26A1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024100687.1 (1321134..1486223, complement)

    NW_024100687.1Genomic Context describing neighboring genes Neighboring gene myosin light chain 10 Neighboring gene U6 spliceosomal RNA Neighboring gene profilin family member 4 Neighboring gene intraflagellar transport 22

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024100687 Unplaced Scaffold Reference ASM1654583v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-1(XXVI) chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1654583v1

    Genomic

    1. NW_024100687.1 Reference ASM1654583v1

      Range
      1321134..1486223 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039333997.1 → XP_039189931.1  collagen alpha-1(XXVI) chain isoform X5

      Conserved Domains (2) summary
      pfam01391
      Location:260 → 315
      Collagen; Collagen triple helix repeat (20 copies)
      pfam07546
      Location:2 → 60
      EMI; EMI domain

    2. XM_039333993.1 → XP_039189927.1  collagen alpha-1(XXVI) chain isoform X2

      Conserved Domains (2) summary
      pfam01391
      Location:318 → 373
      Collagen; Collagen triple helix repeat (20 copies)
      pfam07546
      Location:52 → 118
      EMI; EMI domain

    3. XM_039333996.1 → XP_039189930.1  collagen alpha-1(XXVI) chain isoform X4

      Conserved Domains (2) summary
      pfam01391
      Location:289 → 344
      Collagen; Collagen triple helix repeat (20 copies)
      pfam07546
      Location:52 → 120
      EMI; EMI domain

    4. XM_039333994.1 → XP_039189928.1  collagen alpha-1(XXVI) chain isoform X3

      Conserved Domains (2) summary
      pfam01391
      Location:320 → 375
      Collagen; Collagen triple helix repeat (20 copies)
      pfam07546
      Location:52 → 120
      EMI; EMI domain

    5. XM_039333992.1 → XP_039189926.1  collagen alpha-1(XXVI) chain isoform X1

      Conserved Domains (2) summary
      pfam01391
      Location:320 → 375
      Collagen; Collagen triple helix repeat (20 copies)
      pfam07546
      Location:52 → 120
      EMI; EMI domain
    Nucleotide Protein
    Heading Accession and Version

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