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    LOC120390257 histone-lysine N-methyltransferase PRDM9-like [ Mauremys reevesii (Reeves's turtle) ]

    Gene ID: 120390257, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC120390257
    Gene description
    histone-lysine N-methyltransferase PRDM9-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mauremys reevesii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
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    Genomic context

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    See LOC120390257 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    12
    Annotation release Status Assembly LG Location
    100 current ASM1616193v1 (GCF_016161935.1) 24 NC_052646.1 (21543788..21559425, complement)

    Linkage Group 24 - NC_052646.1Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 1 Neighboring gene CD79a molecule Neighboring gene proline rich 19 Neighboring gene toll-like receptor 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052646.1 Chromosome 24 Reference ASM1616193v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase PRDM9-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1616193v1 Primary Assembly

    Genomic

    1. NC_052646.1 Reference ASM1616193v1 Primary Assembly

      Range
      21543788..21559425 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039512754.1 → XP_039368688.1  histone-lysine N-methyltransferase PRDM9-like isoform X1

      Conserved Domains (5) summary
      COG5048
      Location:521 → 818
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:719 → 739
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19193
      Location:246 → 374
      PR-SET_PRDM7_9; PR-SET domain found in PR domain zinc finger protein 7 (PRDM7) and 9 (PRDM9) and similar proteins
      pfam09514
      Location:182 → 207
      SSXRD; SSXRD motif
      cl02581
      Location:32 → 80
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    2. XM_039512755.1 → XP_039368689.1  histone-lysine N-methyltransferase PRDM9-like isoform X1

      Conserved Domains (5) summary
      COG5048
      Location:521 → 818
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:719 → 739
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19193
      Location:246 → 374
      PR-SET_PRDM7_9; PR-SET domain found in PR domain zinc finger protein 7 (PRDM7) and 9 (PRDM9) and similar proteins
      pfam09514
      Location:182 → 207
      SSXRD; SSXRD motif
      cl02581
      Location:32 → 80
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    3. XM_039512756.1 → XP_039368690.1  histone-lysine N-methyltransferase PRDM9-like isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:479 → 776
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:677 → 697
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19193
      Location:204 → 332
      PR-SET_PRDM7_9; PR-SET domain found in PR domain zinc finger protein 7 (PRDM7) and 9 (PRDM9) and similar proteins
      cl02581
      Location:32 → 80
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    4. XM_039512753.1 → XP_039368687.1  histone-lysine N-methyltransferase PRDM9-like isoform X1

      Conserved Domains (5) summary
      COG5048
      Location:521 → 818
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:719 → 739
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19193
      Location:246 → 374
      PR-SET_PRDM7_9; PR-SET domain found in PR domain zinc finger protein 7 (PRDM7) and 9 (PRDM9) and similar proteins
      pfam09514
      Location:182 → 207
      SSXRD; SSXRD motif
      cl02581
      Location:32 → 80
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    Nucleotide Protein
    Heading Accession and Version

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