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    LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [ Pteropus giganteus (Indian flying fox) ]

    Gene ID: 120602422, updated on 25-Dec-2024

    Summary

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    Gene symbol
    LSM5
    Gene description
    LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pteropus giganteus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
    Orthologs
    human mouse all
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    Genomic context

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    See LSM5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current Ma_sr-lr_union100 (GCF_902729225.1) Unplaced Scaffold NW_024342467.1 (17862306..17865554, complement)

    NW_024342467.1Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 1C Neighboring gene 5S ribosomal RNA Neighboring gene small nucleolar RNA SNORD113/SNORD114 family Neighboring gene 5S ribosomal RNA Neighboring gene AVL9 cell migration associated Neighboring gene kelch repeat and BTB domain containing 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024342467 Unplaced Scaffold Reference Ma_sr-lr_union100

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U6 snRNA-associated Sm-like protein LSm5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pteropus giganteus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ma_sr-lr_union100

    Genomic

    1. NW_024342467.1 Reference Ma_sr-lr_union100

      Range
      17862306..17865554 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039862687.1 → XP_039718621.1  U6 snRNA-associated Sm-like protein LSm5

      Conserved Domains (1) summary
      cd01732
      Location:59 → 134
      LSm5; Like-Sm protein 5
    Nucleotide Protein
    Heading Accession and Version

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