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    LOC121056726 ethylene-responsive transcription factor ERF039-like [ Oryza brachyantha (malo sina) ]

    Gene ID: 121056726, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC121056726
    Gene description
    ethylene-responsive transcription factor ERF039-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza brachyantha
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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    Genomic context

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    See LOC121056726 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current ObraRS2 (GCF_000231095.2) 1 NC_023163.2 (29640599..29642941)

    Chromosome 1 - NC_023163.2Genomic Context describing neighboring genes Neighboring gene abhydrolase domain-containing protein C22H12.03 Neighboring gene putative receptor protein kinase ZmPK1 Neighboring gene UPF0301 protein Cpar_0662-like Neighboring gene transfer RNA isoleucine (anticodon UAU)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_023163.2 Chromosome 1 Reference ObraRS2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor ERF039-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza brachyantha Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ObraRS2 Primary Assembly

    Genomic

    1. NC_023163.2 Reference ObraRS2 Primary Assembly

      Range
      29640599..29642941
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040529983.1 → XP_040385917.1  ethylene-responsive transcription factor ERF039-like

      Conserved Domains (1) summary
      cl00033
      Location:58 → 115
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
    Nucleotide Protein
    Heading Accession and Version

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