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    SLC6A9 solute carrier family 6 member 9 [ Cygnus olor (mute swan) ]

    Gene ID: 121073878, updated on 22-Mar-2024

    Summary

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    Gene symbol
    SLC6A9
    Gene description
    solute carrier family 6 member 9
    See related
    EnsemblRapid:ENSCOLG00015008925
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cygnus olor
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
    Orthologs
    human mouse all
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    Genomic context

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    See SLC6A9 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current bCygOlo1.pri.v2 (GCF_009769625.2) 8 NC_049176.1 (22064159..22083262, complement)

    Chromosome 8 - NC_049176.1Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V0 subunit b Neighboring gene beta-1,4-galactosyltransferase 2 Neighboring gene KLF transcription factor 17 Neighboring gene DNA methyltransferase 1 associated protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_049176.1 Chromosome 8 Reference bCygOlo1.pri.v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycine:sodium symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycine import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neurotransmitter transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic transmission, glycinergic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium- and chloride-dependent glycine transporter 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cygnus olor Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bCygOlo1.pri.v2 Primary Assembly

    Genomic

    1. NC_049176.1 Reference bCygOlo1.pri.v2 Primary Assembly

      Range
      22064159..22083262 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040565396.1 → XP_040421330.1  sodium- and chloride-dependent glycine transporter 1 isoform X3

      Related
      ENSCOLP00015014796.1, ENSCOLT00015016110.1
      Conserved Domains (1) summary
      cd11498
      Location:11 → 588
      SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

    2. XM_040565394.1 → XP_040421328.1  sodium- and chloride-dependent glycine transporter 1 isoform X1

      Conserved Domains (1) summary
      cd11498
      Location:173 → 750
      SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

    3. XM_040565395.1 → XP_040421329.1  sodium- and chloride-dependent glycine transporter 1 isoform X2

      Conserved Domains (1) summary
      cl00456
      Location:1 → 523
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

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