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    LOC121276994 hippocampus abundant transcript 1 protein-like [ Carcharodon carcharias (great white shark) ]

    Gene ID: 121276994, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC121276994
    Gene description
    hippocampus abundant transcript 1 protein-like
    See related
    EnsemblRapid:ENSCHSG00020009683
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carcharodon carcharias
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Lamniformes; Alopiidae; Carcharodon
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    Genomic context

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    See LOC121276994 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current sCarCar2.pri (GCF_017639515.1) 4 NC_054470.1 (38987721..39112310, complement)

    Chromosome 4 - NC_054470.1Genomic Context describing neighboring genes Neighboring gene U8 small nucleolar RNA Neighboring gene leucine rich repeat containing 2 Neighboring gene spindle assembly abnormal protein 6 homolog Neighboring gene spindlin-Z-like Neighboring gene nucleoredoxin like 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_054470.1 Chromosome 4 Reference sCarCar2.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hippocampus abundant transcript 1 protein-like

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Carcharodon carcharias Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sCarCar2.pri Primary Assembly

    Genomic

    1. NC_054470.1 Reference sCarCar2.pri Primary Assembly

      Range
      38987721..39112310 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041185802.1 → XP_041041736.1  hippocampus abundant transcript 1 protein-like isoform X2

      Conserved Domains (1) summary
      cd17387
      Location:117 → 523
      MFS_MFSD14; Major facilitator superfamily domain-containing 14A and 14B

    2. XM_041185801.1 → XP_041041735.1  hippocampus abundant transcript 1 protein-like isoform X1

      Related
      ENSCHSP00020016586.1, ENSCHST00020018400.1
      Conserved Domains (1) summary
      cd17387
      Location:118 → 524
      MFS_MFSD14; Major facilitator superfamily domain-containing 14A and 14B
    Nucleotide Protein
    Heading Accession and Version

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