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    Ssb small RNA binding exonuclease protection factor La [ Microtus oregoni (creeping vole) ]

    Gene ID: 121433201, updated on 22-Mar-2024

    Summary

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    Gene symbol
    Ssb
    Gene description
    small RNA binding exonuclease protection factor La
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Microtus oregoni
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
    Orthologs
    human mouse all
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    Genomic context

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    See Ssb in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current Mior012 (GCF_018167655.1) Unplaced Scaffold NW_024543096.1 (22928141..22942807)

    NW_024543096.1Genomic Context describing neighboring genes Neighboring gene kelch-like protein 23 Neighboring gene phosphatase, orphan 2 Neighboring gene small nucleolar RNA U13 Neighboring gene methyltransferase 5, N6-adenosine Neighboring gene ubiquitin protein ligase E3 component n-recognin 3 Neighboring gene myosin IIIB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024543096 Unplaced Scaffold Reference Mior012

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lupus La protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Microtus oregoni Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mior012

    Genomic

    1. NW_024543096.1 Reference Mior012

      Range
      22928141..22942807
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041631545.1 → XP_041487479.1  lupus La protein

      Conserved Domains (2) summary
      cd08028
      Location:10 → 91
      LARP_3; La RNA-binding domain of La-related protein 3
      COG5193
      Location:20 → 284
      LHP1; La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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