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    LOC121532297 cGMP-dependent protein kinase 1 [ Coregonus clupeaformis (lake whitefish) ]

    Gene ID: 121532297, updated on 28-May-2024

    Summary

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    Gene symbol
    LOC121532297
    Gene description
    cGMP-dependent protein kinase 1
    See related
    EnsemblRapid:ENSCCFG00005049338
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Coregonus clupeaformis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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    Genomic context

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    See LOC121532297 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    101 current ASM2061545v1 (GCF_020615455.1) 1 NC_059192.1 (13489967..13705858, complement)
    100 previous assembly ASM1839867v1 (GCF_018398675.1) 1 NC_055067.1 (10639556..10857475, complement)

    Chromosome 1 - NC_059192.1Genomic Context describing neighboring genes Neighboring gene protocadherin-15-like Neighboring gene dickkopf-related protein 1-like Neighboring gene APOBEC1 complementation factor Neighboring gene neutral ceramidase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cGMP-dependent protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cGMP-dependent protein kinase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2061545v1 Primary Assembly

    Genomic

    1. NC_059192.1 Reference ASM2061545v1 Primary Assembly

      Range
      13489967..13705858 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041838310.2 → XP_041694244.1  cGMP-dependent protein kinase 1 isoform X3

      Related
      ENSCCFP00005114246.1, ENSCCFT00005123855.1
      Conserved Domains (4) summary
      cd12085
      Location:2 → 48
      DD_cGKI-alpha; Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I alpha
      smart00133
      Location:621 → 650
      S_TK_X; Extension to Ser/Thr-type protein kinases
      cd00038
      Location:222 → 326
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      cd05572
      Location:366 → 626
      STKc_cGK; Catalytic domain of the Serine/Threonine Kinase, cGMP-dependent protein kinase (cGK or PKG)

    2. XM_041838196.2 → XP_041694130.1  cGMP-dependent protein kinase 1 isoform X1

      Conserved Domains (4) summary
      cd12086
      Location:4 → 55
      DD_cGKI-beta; Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I beta
      smart00133
      Location:640 → 669
      S_TK_X; Extension to Ser/Thr-type protein kinases
      cd00038
      Location:235 → 339
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      cd05572
      Location:379 → 645
      STKc_cGK; Catalytic domain of the Serine/Threonine Kinase, cGMP-dependent protein kinase (cGK or PKG)

    3. XM_041838285.2 → XP_041694219.1  cGMP-dependent protein kinase 1 isoform X2

      Related
      ENSCCFP00005114222.1, ENSCCFT00005123831.1
      Conserved Domains (4) summary
      cd12086
      Location:4 → 55
      DD_cGKI-beta; Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I beta
      smart00133
      Location:634 → 663
      S_TK_X; Extension to Ser/Thr-type protein kinases
      cd00038
      Location:235 → 339
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      cd05572
      Location:379 → 639
      STKc_cGK; Catalytic domain of the Serine/Threonine Kinase, cGMP-dependent protein kinase (cGK or PKG)

    4. XM_041838333.2 → XP_041694267.1  cGMP-dependent protein kinase 1 isoform X4

      Conserved Domains (2) summary
      smart00133
      Location:334 → 363
      S_TK_X; Extension to Ser/Thr-type protein kinases
      cd05572
      Location:73 → 339
      STKc_cGK; Catalytic domain of the Serine/Threonine Kinase, cGMP-dependent protein kinase (cGK or PKG)

    5. XM_041838394.2 → XP_041694328.1  cGMP-dependent protein kinase 1 isoform X5

      Conserved Domains (2) summary
      smart00133
      Location:261 → 290
      S_TK_X; Extension to Ser/Thr-type protein kinases
      cd05572
      Location:17 → 266
      STKc_cGK; Catalytic domain of the Serine/Threonine Kinase, cGMP-dependent protein kinase (cGK or PKG)
    Nucleotide Protein
    Heading Accession and Version

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