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    AMPH amphiphysin [ Corvus kubaryi (Mariana crow) ]

    Gene ID: 121671445, updated on 3-Aug-2024

    Summary

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    Gene symbol
    AMPH
    Gene description
    amphiphysin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Corvus kubaryi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
    Orthologs
    human mouse all
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    Genomic context

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    See AMPH in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current C.kubaryi_AGA036_p1.0 (GCF_017639235.1) Unplaced Scaffold NW_024581137.1 (4509026..4651785, complement)

    NW_024581137.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor, X-box binding 1 Neighboring gene uncharacterized LOC121672056 Neighboring gene uncharacterized LOC121671364 Neighboring gene solute carrier family 12 member 7-like Neighboring gene uncharacterized LOC121671872 Neighboring gene VPS41 subunit of HOPS complex

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024581137 Unplaced Scaffold Reference C.kubaryi_AGA036_p1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in synaptic vesicle endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amphiphysin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Corvus kubaryi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.kubaryi_AGA036_p1.0

    Genomic

    1. NW_024581137.1 Reference C.kubaryi_AGA036_p1.0

      Range
      4509026..4651785 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042043152.1 → XP_041899086.1  amphiphysin isoform X2

      Conserved Domains (3) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      PHA02682
      Location:248 → 357
      PHA02682; ORF080 virion core protein; Provisional
      cd12140
      Location:778 → 849
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I

    2. XM_042043154.1 → XP_041899088.1  amphiphysin isoform X4

      Conserved Domains (3) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      PHA02682
      Location:248 → 360
      PHA02682; ORF080 virion core protein; Provisional
      cd12140
      Location:720 → 791
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I

    3. XM_042043153.1 → XP_041899087.1  amphiphysin isoform X3

      Conserved Domains (3) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      PHA02682
      Location:248 → 360
      PHA02682; ORF080 virion core protein; Provisional
      cd12140
      Location:739 → 810
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I

    4. XM_042043151.1 → XP_041899085.1  amphiphysin isoform X1

      Conserved Domains (3) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      PHA02682
      Location:248 → 360
      PHA02682; ORF080 virion core protein; Provisional
      cd12140
      Location:781 → 852
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I

    5. XM_042043156.1 → XP_041899090.1  amphiphysin isoform X5

      Conserved Domains (4) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      PHA02682
      Location:248 → 360
      PHA02682; ORF080 virion core protein; Provisional
      PTZ00449
      Location:262 → 535
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd12140
      Location:614 → 685
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I

    6. XM_042043157.1 → XP_041899091.1  amphiphysin isoform X6

      Conserved Domains (4) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      PHA02682
      Location:248 → 357
      PHA02682; ORF080 virion core protein; Provisional
      PTZ00449
      Location:235 → 532
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd12140
      Location:611 → 682
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I
    Nucleotide Protein
    Heading Accession and Version

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