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    RAD54L RAD54 like [ Lagopus leucura (white-tailed ptarmigan) ]

    Gene ID: 122181238, updated on 22-Mar-2024

    Summary

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    Gene symbol
    RAD54L
    Gene description
    RAD54 like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lagopus leucura
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus
    Orthologs
    human mouse all
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    Genomic context

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    See RAD54L in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current USGS_WTPT01 (GCF_019238085.1) Unplaced Scaffold NW_024962266.1 (20797325..20816565)

    NW_024962266.1Genomic Context describing neighboring genes Neighboring gene leucine rich adaptor protein 1 Neighboring gene uncharacterized LOC122181417 Neighboring gene leucine rich repeat containing 41 Neighboring gene cytochrome b-c1 complex subunit 6, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024962266 Unplaced Scaffold Reference USGS_WTPT01

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA translocase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via synthesis-dependent strand annealing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reciprocal meiotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA repair and recombination protein RAD54-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lagopus leucura Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USGS_WTPT01

    Genomic

    1. NW_024962266.1 Reference USGS_WTPT01

      Range
      20797325..20816565
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042873625.1 → XP_042729559.1  DNA repair and recombination protein RAD54-like isoform X1

      Conserved Domains (2) summary
      COG0553
      Location:151 → 666
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18067
      Location:151 → 393
      DEXHc_RAD54A; DEXH-box helicase domain of RAD54A

    2. XM_042873626.1 → XP_042729560.1  DNA repair and recombination protein RAD54-like isoform X2

      Conserved Domains (2) summary
      COG0553
      Location:41 → 556
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18067
      Location:41 → 283
      DEXHc_RAD54A; DEXH-box helicase domain of RAD54A
    Nucleotide Protein
    Heading Accession and Version

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