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    rps6ka4 ribosomal protein S6 kinase, polypeptide 4 [ Puntigrus tetrazona (Sumatra barb) ]

    Gene ID: 122345291, updated on 8-May-2024

    Summary

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    Gene symbol
    rps6ka4
    Gene description
    ribosomal protein S6 kinase, polypeptide 4
    See related
    EnsemblRapid:ENSPRZG00000024621
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Puntigrus tetrazona
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
    Orthologs
    zebrafish all
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    Genomic context

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    See rps6ka4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current ASM1883169v1 (GCF_018831695.1) 5 NC_056703.1 (26769931..26789018, complement)

    Chromosome 5 - NC_056703.1Genomic Context describing neighboring genes Neighboring gene stress-induced phosphoprotein 1 Neighboring gene fibronectin leucine rich transmembrane protein 1a Neighboring gene filaggrin-2 Neighboring gene retinal outer segment membrane protein 1a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056703.1 Chromosome 5 Reference ASM1883169v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosomal protein S6 kinase alpha-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1883169v1 Primary Assembly

    Genomic

    1. NC_056703.1 Reference ASM1883169v1 Primary Assembly

      Range
      26769931..26789018 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043239284.1 → XP_043095219.1  ribosomal protein S6 kinase alpha-4 isoform X3

      Related
      ENSPRZP00000051400.1, ENSPRZT00000058957.1
      Conserved Domains (2) summary
      cd14180
      Location:338 → 648
      STKc_MSK2_C; C-terminal catalytic domain of the Serine/Threonine Kinase, Mitogen and stress-activated kinase 2
      cl21453
      Location:2 → 299
      PKc_like; Protein Kinases, catalytic domain

    2. XM_043239283.1 → XP_043095218.1  ribosomal protein S6 kinase alpha-4 isoform X2

      Related
      ENSPRZP00000051418.1, ENSPRZT00000058975.1
      Conserved Domains (2) summary
      cd05614
      Location:28 → 350
      STKc_MSK2_N; N-terminal catalytic domain of the Serine/Threonine Kinase, Mitogen and stress-activated kinase 2
      cd14180
      Location:389 → 699
      STKc_MSK2_C; C-terminal catalytic domain of the Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

    3. XM_043239282.1 → XP_043095217.1  ribosomal protein S6 kinase alpha-4 isoform X1

      Related
      ENSPRZP00000051451.1, ENSPRZT00000059008.1
      Conserved Domains (2) summary
      cd05614
      Location:43 → 374
      STKc_MSK2_N; N-terminal catalytic domain of the Serine/Threonine Kinase, Mitogen and stress-activated kinase 2
      cd14180
      Location:413 → 723
      STKc_MSK2_C; C-terminal catalytic domain of the Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

    4. XM_043239285.1 → XP_043095220.1  ribosomal protein S6 kinase alpha-4 isoform X4

      Related
      ENSPRZP00000051217.1, ENSPRZT00000058774.1
      Conserved Domains (2) summary
      cd14180
      Location:280 → 590
      STKc_MSK2_C; C-terminal catalytic domain of the Serine/Threonine Kinase, Mitogen and stress-activated kinase 2
      cl21453
      Location:1 → 241
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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