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    LOC122448958 histone-lysine N-methyltransferase PRDM9-like [ Cervus canadensis ]

    Gene ID: 122448958, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC122448958
    Gene description
    histone-lysine N-methyltransferase PRDM9-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cervus canadensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae; Cervus
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    Genomic context

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    See LOC122448958 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current ASM1932006v1 (GCF_019320065.1) 10 NC_057395.1 (82132006..82147742, complement)

    Chromosome 10 - NC_057395.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase PRDM9-like Neighboring gene probable histone-lysine N-methyltransferase PRDM7 Neighboring gene histone-lysine N-methyltransferase PRDM9-like Neighboring gene uncharacterized LOC122448816 Neighboring gene histone-lysine N-methyltransferase PRDM9-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057395.1 Chromosome 10 Reference ASM1932006v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase PRDM9-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cervus canadensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1932006v1

    Genomic

    1. NC_057395.1 Reference ASM1932006v1

      Range
      82132006..82147742 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043480610.1 → XP_043336545.1  histone-lysine N-methyltransferase PRDM9-like

      Conserved Domains (3) summary
      COG5048
      Location:416 → 767
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:461 → 481
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19193
      Location:122 → 250
      PR-SET_PRDM7_9; PR-SET domain found in PR domain zinc finger protein 7 (PRDM7) and 9 (PRDM9) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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