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    Syb Vesicle-associated membrane protein synaptobrevin [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1269522, updated on 22-Jun-2024

    Summary

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    Gene symbol
    Syb
    Gene description
    Vesicle-associated membrane protein synaptobrevin
    See related
    VectorBase:AGAMI1_001336
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP007721
    Orthologs
    fruit fly all
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    Genomic context

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    See Syb in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (118032569..118039866)

    Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC133392065 Neighboring gene beta-1,4-galactosyltransferase galt-1 Neighboring gene hornerin Neighboring gene Chondroitin sulfate N-acetylgalactosaminyltransferase Neighboring gene guanine nucleotide exchange factor DBS Neighboring gene Adenylate kinase 2 Neighboring gene uncharacterized LOC133392066 Neighboring gene glycogenin 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones. Gomez SM, et al. Genome Biol, 2005. PMID 15833126, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptobrevin; synaptobrevin-1
    Names
    AGAP007721-PA
    AGAP007721-PB
    AGAP007721-PC

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      118032569..118039866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001687795.2 → XP_001687847.1  synaptobrevin isoform X4

      See identical proteins and their annotated locations for XP_001687847.1

      UniProtKB/TrEMBL
      Q7PT71
      Conserved Domains (2) summary
      cd15870
      Location:27 → 88
      R-SNARE_VAMP2; SNARE motif of VAMP2
      pfam00957
      Location:26 → 95
      Synaptobrevin; Synaptobrevin

    2. XM_001687796.2 → XP_001687848.1  synaptobrevin isoform X3

      See identical proteins and their annotated locations for XP_001687848.1

      UniProtKB/TrEMBL
      A7UR64
      Conserved Domains (1) summary
      cd15870
      Location:38 → 99
      R-SNARE_VAMP2; SNARE motif of VAMP2

    3. XM_061650087.1 → XP_061506071.1  synaptobrevin-1 isoform X1

    4. XM_061650093.1 → XP_061506077.1  synaptobrevin-1 isoform X2

    5. XM_061650088.1 → XP_061506072.1  synaptobrevin-1 isoform X1

    6. XM_061650100.1 → XP_061506084.1  synaptobrevin isoform X3

      UniProtKB/TrEMBL
      A7UR64

    7. XM_061650096.1 → XP_061506080.1  synaptobrevin-1 isoform X2

    8. XM_308156.4 → XP_308156.3  synaptobrevin isoform X4

      See identical proteins and their annotated locations for XP_308156.3

      UniProtKB/TrEMBL
      Q7PT71
      Conserved Domains (2) summary
      cd15870
      Location:27 → 88
      R-SNARE_VAMP2; SNARE motif of VAMP2
      pfam00957
      Location:26 → 95
      Synaptobrevin; Synaptobrevin

    9. XM_061650089.1 → XP_061506073.1  synaptobrevin-1 isoform X1

    10. XM_061650107.1 → XP_061506091.1  synaptobrevin isoform X4

      UniProtKB/TrEMBL
      Q7PT71

    11. XM_061650097.1 → XP_061506081.1  synaptobrevin-1 isoform X2

    12. XM_061650091.1 → XP_061506075.1  synaptobrevin-1 isoform X1

    13. XM_061650106.1 → XP_061506090.1  synaptobrevin isoform X4

      UniProtKB/TrEMBL
      Q7PT71

    14. XM_061650098.1 → XP_061506082.1  synaptobrevin-1 isoform X2

    15. XM_061650103.1 → XP_061506087.1  synaptobrevin isoform X3

      UniProtKB/TrEMBL
      A7UR64

    16. XM_061650102.1 → XP_061506086.1  synaptobrevin isoform X3

      UniProtKB/TrEMBL
      A7UR64

    17. XM_061650099.1 → XP_061506083.1  synaptobrevin isoform X3

      UniProtKB/TrEMBL
      A7UR64

    18. XM_061650090.1 → XP_061506074.1  synaptobrevin-1 isoform X1

    19. XM_061650104.1 → XP_061506088.1  synaptobrevin isoform X4

      UniProtKB/TrEMBL
      Q7PT71

    20. XM_061650094.1 → XP_061506078.1  synaptobrevin-1 isoform X2

    21. XM_061650108.1 → XP_061506092.1  synaptobrevin isoform X4

      UniProtKB/TrEMBL
      Q7PT71

    22. XM_061650101.1 → XP_061506085.1  synaptobrevin isoform X3

      UniProtKB/TrEMBL
      A7UR64

    23. XM_061650092.1 → XP_061506076.1  synaptobrevin-1 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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