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    LOC127131452 DNA (cytosine-5)-methyltransferase 1-like [ Pisum sativum (garden pea) ]

    Gene ID: 127131452, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC127131452
    Gene description
    DNA (cytosine-5)-methyltransferase 1-like
    Locus tag
    KIW84_013246
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pisum sativum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Fabeae; Pisum
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    Genomic context

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    See LOC127131452 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current CAAS_Psat_ZW6_1.0 (GCF_024323335.1) 1 NC_066579.1 (298283645..298293236, complement)

    Chromosome 1 - NC_066579.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127103938 Neighboring gene ATP synthase subunit b, chloroplastic-like Neighboring gene ATP synthase subunit alpha, chloroplastic-like Neighboring gene uncharacterized LOC127103963 Neighboring gene uncharacterized LOC127115684

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_066579.1 Chromosome 1 Reference CAAS_Psat_ZW6_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation, characterization and baculovirus-mediated expression of the cDNA encoding cytosine DNA methyltransferase from Pisum sativum. Pradhan S, et al. Nucleic Acids Res, 1998 Mar 1. PMID 9469828, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA (cytosine-5-)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA (cytosine-5)-methyltransferase 1-like
    Names
    DNA (cytosine-5)-methyltransferase 1
    cytosine-5 DNA methyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pisum sativum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Psat_ZW6_1.0

    Genomic

    1. NC_066579.1 Reference CAAS_Psat_ZW6_1.0

      Range
      298283645..298293236 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051060374.1 → XP_050916331.1  DNA (cytosine-5)-methyltransferase 1-like

      UniProtKB/TrEMBL
      A0A9D5BJM1
    Nucleotide Protein
    Heading Accession and Version

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