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    AlkB alpha-ketoglutarate-dependent dioxygenase AlkB [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1272107, updated on 3-Dec-2024

    Summary

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    Gene symbol
    AlkB
    Gene description
    alpha-ketoglutarate-dependent dioxygenase AlkB
    See related
    VectorBase:AGAMI1_004517
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP000155
    Orthologs
    fruit fly all
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    Genomic context

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    See AlkB in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) X NC_064600.1 (2498435..2499962)

    Chromosome X - NC_064600.1Genomic Context describing neighboring genes Neighboring gene cadherin-86C Neighboring gene uncharacterized LOC1272111 Neighboring gene probable 4-coumarate--CoA ligase 1 Neighboring gene spindle apparatus coiled-coil protein 1 spindly Neighboring gene transmembrane protein fend Neighboring gene uncharacterized LOC1272105

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064600.1 Chromosome X Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables broad specificity oxidative DNA demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ferrous iron binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidative RNA demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in oxidative RNA demethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleic acid dioxygenase ALKBH1
    Names
    AGAP000155-PA
    alkylated DNA repair protein alkB homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064600.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      2498435..2499962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061644818.1 → XP_061500802.1  nucleic acid dioxygenase ALKBH1

      UniProtKB/TrEMBL
      Q7QEU7

    2. XM_310984.5 → XP_310984.5  nucleic acid dioxygenase ALKBH1

      UniProtKB/TrEMBL
      Q7QEU7
    Nucleotide Protein Strain
    Heading Accession and Version

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