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    LOC127814759 H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:38026554-38027063 [ Homo sapiens (human) ]

    Gene ID: 127814759, updated on 12-Sep-2024

    Summary

    Gene symbol
    LOC127814759
    Gene description
    H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:38026554-38027063
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Nov 2022]
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    Genomic context

    See LOC127814759 in Genome Data Viewer
    Location:
    chromosome: 9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (38026557..38027066)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (38050485..38050994)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (38026554..38027063)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 51 Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19914 Neighboring gene thioredoxin related transmembrane protein 2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28405 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:37923197-37923808 Neighboring gene RNA, U7 small nuclear 124 pseudogene Neighboring gene SH2 domain containing adaptor protein B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:37951849-37952348 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28406 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28407 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:37997675-37998176 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28408 Neighboring gene Sharpr-MPRA regulatory region 5136 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:38008584-38009525 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:38010092-38010724 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19915 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:38016883-38017646 Neighboring gene Sharpr-MPRA regulatory region 2787 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:38021463-38021972 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:38026045-38026553 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:38027064-38027572 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:38027573-38028081 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:38028793-38028962 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:38030139-38030638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:38032069-38032570 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:38037811-38038416 Neighboring gene VISTA enhancer hs2062 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:38047203-38048402 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:38048927-38049920 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:38058891-38060090 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:38067661-38068464 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19917 Neighboring gene uncharacterized LOC105376039 Neighboring gene Sharpr-MPRA regulatory region 13386 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28410 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28411 Neighboring gene U8 small nucleolar RNA

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_116279.1 

      Range
      101..610
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      38026557..38027066
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      38050485..38050994
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)