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    LOC127815005 OCT4 hESC enhancer GRCh37_chr9:82664925-82665426 [ Homo sapiens (human) ]

    Gene ID: 127815005, updated on 12-Sep-2024

    Summary

    Gene symbol
    LOC127815005
    Gene description
    OCT4 hESC enhancer GRCh37_chr9:82664925-82665426
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer associates with the OCT4 transcription factor. [provided by RefSeq, Nov 2022]
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    Genomic context

    See LOC127815005 in Genome Data Viewer
    Location:
    chromosome: 9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (80050010..80050511)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (92208356..92208857)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (82664925..82665426)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1507 Neighboring gene uncharacterized LOC105376100 Neighboring gene VISTA enhancer hs1163 Neighboring gene uncharacterized LOC105376099 Neighboring gene VISTA enhancer hs1004 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:82757334-82758145 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:82771847-82772348 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:82852704-82853204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:82853205-82853705 Neighboring gene uncharacterized LOC105376103 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:83015743-83016349 Neighboring gene nuclear pore associated protein 1 pseudogene 4 Neighboring gene MT-CO1 pseudogene 51

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_116523.1 

      Range
      101..602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      80050010..80050511
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      92208356..92208857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)