U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC127970643 KH domain-containing, RNA-binding, signal transduction-associated protein 2 [ Carassius gibelio (silver crucian carp) ]

    Gene ID: 127970643, updated on 28-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC127970643
    Gene description
    KH domain-containing, RNA-binding, signal transduction-associated protein 2
    See related
    EnsemblRapid:ENSCGBG00020045478
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carassius gibelio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC127970643 in Genome Data Viewer
    Location:
    chromosome: B13
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_02 current carGib1.2-hapl.c (GCF_023724105.1) B13 NC_068408.1 (15276849..15350329, complement)

    Chromosome B13 - NC_068408.1Genomic Context describing neighboring genes Neighboring gene DNA primase large subunit-like Neighboring gene mitogen-activated protein kinase kinase kinase 21 Neighboring gene interleukin 22 receptor, alpha 2 Neighboring gene uncharacterized LOC127970645 Neighboring gene uncharacterized LOC127970644 Neighboring gene isoaspartyl peptidase/L-asparaginase Neighboring gene uncharacterized LOC127969773 Neighboring gene sorbin and SH3 domain-containing protein 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_068408.1 Chromosome B13 Reference carGib1.2-hapl.c Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(A) binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    KH domain-containing, RNA-binding, signal transduction-associated protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_023724105.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference carGib1.2-hapl.c Primary Assembly

    Genomic

    1. NC_068408.1 Reference carGib1.2-hapl.c Primary Assembly

      Range
      15276849..15350329 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_052573308.1 → XP_052429268.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X2

    2. XM_052573307.1 → XP_052429267.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X2

    3. XM_052573306.1 → XP_052429266.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

      Related
      ENSCGBP00020054581.1, ENSCGBT00020082732.1

    4. XM_052573305.1 → XP_052429265.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

      Related
      ENSCGBP00020054580.1, ENSCGBT00020082731.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases