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    LOC128926598 CapStarr-seq enhancer MGSCv37_chr11:52132162-52132271 [ Mus musculus (house mouse) ]

    Gene ID: 128926598, updated on 8-Feb-2024

    Summary

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    Gene symbol
    LOC128926598
    Gene description
    CapStarr-seq enhancer MGSCv37_chr11:52132162-52132271
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rr369200
    Summary
    This genomic region was identified as a candidate cis-regulatory module (CRM) in developing mouse thymocytes based on a combination of DNase I hypersensitivity and transcription factor binding. It was validated as an active enhancer by high-throughput CapStarr-seq reporter assays showing weak activity in NIH3T3 fibroblasts. [provided by RefSeq, Mar 2023]
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    Genomic context

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    See LOC128926598 in Genome Data Viewer
    Location:
    chromosome: 11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (52209487..52209596)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_29443 Neighboring gene STARR-seq mESC enhancer starr_29444 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:52045093-52045276 Neighboring gene STARR-positive B cell enhancer ABC_E8401 Neighboring gene olfactory receptor family 2 subfamily Y member 6 Neighboring gene S-phase kinase-associated protein 1 Neighboring gene transcription factor 7, T cell specific Neighboring gene STARR-seq mESC enhancer starr_29449 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:52096181-52096290 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:52097872-52098055 Neighboring gene STARR-seq mESC enhancer starr_29452 Neighboring gene STARR-seq mESC enhancer starr_29453 Neighboring gene predicted gene, 30217 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:52152988-52153277 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:52154886-52154995 Neighboring gene STARR-positive B cell enhancer ABC_E11479 Neighboring gene STARR-seq mESC enhancer starr_29458 Neighboring gene voltage-dependent anion channel 1 Neighboring gene RIKEN cDNA 9530068E07 gene Neighboring gene STARR-positive B cell enhancer ABC_E3950

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. Vanhille L, et al. Nat Commun, 2015 Apr 15. PMID 25872643

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • regulatory region 369200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_152250.1 

      Range
      101..210
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      52209487..52209596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version