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    SMARCA1 SNF2 related chromatin remodeling ATPase 1 [ Kogia breviceps (pygmy sperm whale) ]

    Gene ID: 131748696, updated on 20-Sep-2024

    Summary

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    Gene symbol
    SMARCA1
    Gene description
    SNF2 related chromatin remodeling ATPase 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Kogia breviceps
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Kogia
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCA1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_07 current mKogBre1 haplotype 1 (GCF_026419965.1) X NC_081330.1 (19902054..19972326)

    Chromosome X - NC_081330.1Genomic Context describing neighboring genes Neighboring gene apelin Neighboring gene OCRL inositol polyphosphate-5-phosphatase Neighboring gene uncharacterized LOC136793407 Neighboring gene actin related protein T1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_081330.1 Chromosome X Reference mKogBre1 haplotype 1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable global transcription activator SNF2L1
    Names
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_026419965.1-RS_2024_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mKogBre1 haplotype 1 Primary Assembly

    Genomic

    1. NC_081330.1 Reference mKogBre1 haplotype 1 Primary Assembly

      Range
      19902054..19972326
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059050921.2 → XP_058906904.1  probable global transcription activator SNF2L1 isoform X5

    2. XM_067024298.1 → XP_066880399.1  probable global transcription activator SNF2L1 isoform X11

    3. XM_059050926.2 → XP_058906909.1  probable global transcription activator SNF2L1 isoform X9

    4. XM_067024297.1 → XP_066880398.1  probable global transcription activator SNF2L1 isoform X10

    5. XM_059050920.2 → XP_058906903.1  probable global transcription activator SNF2L1 isoform X2

    6. XM_067024299.1 → XP_066880400.1  probable global transcription activator SNF2L1 isoform X12

    7. XM_067024293.1 → XP_066880394.1  probable global transcription activator SNF2L1 isoform X3

    8. XM_059050922.2 → XP_058906905.1  probable global transcription activator SNF2L1 isoform X7

    9. XM_067024292.1 → XP_066880393.1  probable global transcription activator SNF2L1 isoform X1

    10. XM_067024294.1 → XP_066880395.1  probable global transcription activator SNF2L1 isoform X4

    11. XM_067024295.1 → XP_066880396.1  probable global transcription activator SNF2L1 isoform X6

    12. XM_067024296.1 → XP_066880397.1  probable global transcription activator SNF2L1 isoform X8

    Nucleotide Protein
    Heading Accession and Version

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