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    LOC132410487 STARR-positive B cell enhancer mm9_chr4:145482093-145482393 [ Mus musculus (house mouse) ]

    Gene ID: 132410487, updated on 10-Feb-2024

    Summary

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    Gene symbol
    LOC132410487
    Gene description
    STARR-positive B cell enhancer mm9_chr4:145482093-145482393
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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    Genomic context

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    See LOC132410487 in Genome Data Viewer
    Location:
    chromosome: 4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (145618760..145619060)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_12036 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145446019-145446319 Neighboring gene STARR-seq mESC enhancer starr_12037 Neighboring gene STARR-seq mESC enhancer starr_12038 Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_12039 Neighboring gene 60S acidic ribosomal protein P1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_12040 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145479925-145480225 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145483669-145483970 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146017850-146018151 Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3 pseudogene Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene regulatory networks STARR-ing B cells. Martínez de Paz A, et al. Nat Immunol, 2020 Feb. PMID 31873293, Free PMC Article
    2. Charting the cis-regulome of activated B cells by coupling structural and functional genomics. Chaudhri VK, et al. Nat Immunol, 2020 Feb. PMID 31873292

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_234345.1 

      Range
      101..401
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      145618760..145619060
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version