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    LOC132410562 STARR-positive B cell enhancer mm9_chr4:146648875-146649175 [ Mus musculus (house mouse) ]

    Gene ID: 132410562, updated on 10-Feb-2024

    Summary

    Gene symbol
    LOC132410562
    Gene description
    STARR-positive B cell enhancer mm9_chr4:146648875-146649175
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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    Genomic context

    See LOC132410562 in Genome Data Viewer
    Location:
    chromosome: 4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (147359223..147359523)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 54268 Neighboring gene STARR-seq mESC enhancer starr_12048 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146606459-146606760 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146607371-146607671 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146608963-146609264 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146609347-146609647 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146611887-146612187 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146612549-146612850 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146626035-146626336 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146627810-146628111 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146631298-146631599 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146633608-146633909 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146639138-146639438 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146641104-146641405 Neighboring gene protein CDV3 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr4:146646234-146646534 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene Neighboring gene predicted gene 13144

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_234420.1 

      Range
      101..401
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      147359223..147359523
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)