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    LOC132608166 small nuclear ribonucleoprotein SmD1b-like [ Lycium barbarum (goji berry) ]

    Gene ID: 132608166, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC132608166
    Gene description
    small nuclear ribonucleoprotein SmD1b-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lycium barbarum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Lycieae; Lycium
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    Genomic context

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    See LOC132608166 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current ASM1917538v2 (GCF_019175385.1) 1 NC_083337.1 (170941302..170945434, complement)

    Chromosome 1 - NC_083337.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132618150 Neighboring gene outer envelope membrane protein 7-like Neighboring gene adenylate isopentenyltransferase 3, chloroplastic-like Neighboring gene uncharacterized LOC132618160

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_083337.1 Chromosome 1 Reference ASM1917538v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SMN-Sm protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U12-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of commitment complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of pICln-Sm protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small nuclear ribonucleoprotein SmD1b-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_019175385.1-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1917538v2 Primary Assembly

    Genomic

    1. NC_083337.1 Reference ASM1917538v2 Primary Assembly

      Range
      170941302..170945434 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_060322240.1 → XP_060178223.1  small nuclear ribonucleoprotein SmD1b-like

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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