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    LMXM_27_1970 small nuclear ribonucleoprotein protein,putative [ Leishmania mexicana MHOM/GT/2001/U1103 ]

    Gene ID: 13449945, updated on 30-Oct-2024

    Summary

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    Gene symbol
    LMXM_27_1970
    Gene description
    small nuclear ribonucleoprotein protein,putative
    Locus tag
    LMXM_27_1970
    Gene type
    protein coding
    RNA name
    small nuclear ribonucleoprotein protein,putative
    RefSeq status
    PROVISIONAL
    Organism
    Leishmania mexicana MHOM/GT/2001/U1103 (strain: MHOM/GT/2001/U1103)
    Lineage
    Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania
    Orthologs
    Leishmania major all
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    Genomic context

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    See LMXM_27_1970 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    1
    Sequence:
    Chromosome: 27; NC_018331.1 (825733..826068, complement)

    Chromosome 27 - NC_018331.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene putative FtsJ cell division protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_018331.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Rogers MB, et al. Genome Res, 2011 Dec. PMID 22038252, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    small nuclear ribonucleoprotein protein,putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_018331.1 Reference assembly

      Range
      825733..826068 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003876724.1 → XP_003876773.1  small nuclear ribonucleoprotein protein,putative [Leishmania mexicana MHOM/GT/2001/U1103]

      See identical proteins and their annotated locations for XP_003876773.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E9AZA1
      Conserved Domains (1) summary
      cd01717
      Location:2 → 79
      Sm_B; Sm protein B
    Nucleotide Protein
    Heading Accession and Version

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