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    LOC136271965 probable E3 ubiquitin-protein ligase MID2 [ Magallana gigas (Pacific oyster) ]

    Gene ID: 136271965, updated on 3-Jul-2024

    Summary

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    Gene symbol
    LOC136271965
    Gene description
    probable E3 ubiquitin-protein ligase MID2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Magallana gigas
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Magallana
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    Genomic context

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    See LOC136271965 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current xbMagGiga1.1 (GCF_963853765.1) 9 NC_088861.1 (46673455..46684873)

    Chromosome 9 - NC_088861.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM71 Neighboring gene THAP domain-containing protein 11 Neighboring gene uncharacterized LOC105348435 Neighboring gene uncharacterized LOC117690475 Neighboring gene uncharacterized LOC117685860 Neighboring gene uncharacterized LOC105342034 Neighboring gene adhesion G protein-coupled receptor B1-like Neighboring gene uncharacterized LOC136271967

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_088861.1 Chromosome 9 Reference xbMagGiga1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase MID2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_963853765.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference xbMagGiga1.1

    Genomic

    1. NC_088861.1 Reference xbMagGiga1.1

      Range
      46673455..46684873
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066072586.1 → XP_065928658.1  probable E3 ubiquitin-protein ligase MID2 isoform X1

    2. XM_066072587.1 → XP_065928659.1  probable E3 ubiquitin-protein ligase MID2 isoform X1

    3. XM_066072590.1 → XP_065928662.1  probable E3 ubiquitin-protein ligase MID2 isoform X2

    4. XM_066072589.1 → XP_065928661.1  probable E3 ubiquitin-protein ligase MID2 isoform X2

    5. XM_066072588.1 → XP_065928660.1  probable E3 ubiquitin-protein ligase MID2 isoform X1

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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