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    Baalc BAALC binder of MAP3K1 and KLF4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 140720, updated on 9-Dec-2024

    Summary

    Official Symbol
    Baalcprovided by RGD
    Official Full Name
    BAALC binder of MAP3K1 and KLF4provided by RGD
    Primary source
    RGD:628703
    See related
    EnsemblRapid:ENSRNOG00000004697 AllianceGenome:RGD:628703
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in cytosol; nucleoplasm; and sarcoplasm. Predicted to be active in cytoplasm. Orthologous to human BAALC (BAALC binder of MAP3K1 and KLF4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 95.8), Adrenal (RPKM 74.8) and 2 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Baalc in Genome Data Viewer
    Location:
    7q22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (71803640..71877608)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (69918998..69992289)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (77761056..77836534)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V1 subunit C1 Neighboring gene uncharacterized LOC134479714 Neighboring gene uncharacterized LOC134479898 Neighboring gene frizzled class receptor 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane raft IEA
    Inferred from Electronic Annotation
    more info
     
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in postsynaptic density IEA
    Inferred from Electronic Annotation
    more info
     
    located_in sarcoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    brain and acute leukemia cytoplasmic protein
    Names
    BAALC, MAP3K1 and KLF4 binding
    brain and acute leukemia, cytoplasmic

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144762.3NP_658907.1  brain and acute leukemia cytoplasmic protein

      See identical proteins and their annotated locations for NP_658907.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/Swiss-Prot
      Q790N3, Q920K5
      UniProtKB/TrEMBL
      A6HR63
      Related
      ENSRNOP00000107827.1, ENSRNOT00000127989.1
      Conserved Domains (1) summary
      pfam06989
      Location:150
      BAALC_N; BAALC N-terminus

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      71803640..71877608
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063262929.1XP_063118999.1  brain and acute leukemia cytoplasmic protein isoform X1

      Related
      ENSRNOP00000006411.5, ENSRNOT00000006411.8