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    IMG5_202390 hypothetical protein [ Ichthyophthirius multifiliis ]

    Gene ID: 14903112, updated on 28-Dec-2023

    Summary

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    Gene symbol
    IMG5_202390
    Gene description
    hypothetical protein
    Locus tag
    IMG5_202390
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Ichthyophthirius multifiliis (strain: G5)
    Lineage
    Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Hymenostomatida; Ophryoglenina; Ichthyophthirius
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    Genomic context

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    See IMG5_202390 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_004085883.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein, putative Neighboring gene hypothetical protein Neighboring gene protein kinase domain protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004085883.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Repeated regions

    • Loc: 80919-80952 rpt_type = tandem , satellite = microsatellite
    • Loc: 80923-80960 rpt_type = tandem , satellite = microsatellite
    • Loc: 82295-82328 rpt_type = tandem , satellite = microsatellite

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mismatched DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mismatch repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MutLalpha complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein
    XP_004023942.1
    • encoded by transcript IMG5_202390A

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_004085883.1 Reference assembly

      Range
      80841..82619
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004023893.1 → XP_004023942.1  hypothetical protein IMG5_202390 [Ichthyophthirius multifiliis]

      See identical proteins and their annotated locations for XP_004023942.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      G0R635
      Conserved Domains (3) summary
      cd00782
      Location:233 → 357
      MutL_Trans; MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is ...
      TIGR00585
      Location:1 → 338
      mutl; DNA mismatch repair protein MutL
      cl00075
      Location:44 → 133
      HATPase_c; Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
    Nucleotide Protein
    Heading Accession and Version

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