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    IMG5_187840 hypothetical protein [ Ichthyophthirius multifiliis ]

    Gene ID: 14903917, updated on 28-Dec-2023

    Summary

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    Gene symbol
    IMG5_187840
    Gene description
    hypothetical protein
    Locus tag
    IMG5_187840
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Ichthyophthirius multifiliis (strain: G5)
    Lineage
    Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Hymenostomatida; Ophryoglenina; Ichthyophthirius
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    Genomic context

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    See IMG5_187840 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    7

    NW_004085956.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2c, putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene poly polymerase, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004085956.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin light chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in receptor-mediated endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin coat of coated pit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of clathrin coat of trans-Golgi network vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of clathrin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein
    XP_004027184.1
    • encoded by transcript IMG5_187840A

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_004085956.1 Reference assembly

      Range
      14614..20133 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004027135.1 → XP_004027184.1  hypothetical protein IMG5_187840 [Ichthyophthirius multifiliis]

      See identical proteins and their annotated locations for XP_004027184.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      G0R3W3
      Conserved Domains (4) summary
      smart00299
      Location:991 → 1132
      CLH; Clathrin heavy chain repeat homology
      sd00006
      Location:1118 → 1146
      TPR; TPR repeat [structural motif]
      pfam00637
      Location:1146 → 1281
      Clathrin; Region in Clathrin and VPS
      pfam13838
      Location:376 → 430
      Clathrin_H_link; Clathrin-H-link
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases