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    ACA1_179210 midasin family protein [ Acanthamoeba castellanii str. Neff ]

    Gene ID: 14916851, updated on 17-May-2024

    Summary

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    Gene symbol
    ACA1_179210
    Gene description
    midasin family protein
    Locus tag
    ACA1_179210
    See related
    AmoebaDB:ACA1_179210; VEuPathDB:ACA1_179210
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Acanthamoeba castellanii str. Neff (strain: Neff, culture-collection: ATCC:30010)
    Lineage
    Eukaryota; Amoebozoa; Discosea; Longamoebia; Centramoebida; Acanthamoebidae; Acanthamoeba
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    Genomic context

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    See ACA1_179210 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    17

    NW_004457410.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004457410.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Clarke M, et al. Genome Biol, 2013 Feb 1. PMID 23375108, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal large subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of preribosome, large subunit precursor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    midasin family protein
    XP_004338232.1
    • encoded by transcript ACA1_179210A

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_004457410.1 Reference assembly

      Range
      320806..326727
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004338184.1 → XP_004338232.1  midasin family protein [Acanthamoeba castellanii str. Neff]

      See identical proteins and their annotated locations for XP_004338232.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      L8GSN7
      Conserved Domains (3) summary
      smart00382
      Location:1181 → 1321
      AAA; ATPases associated with a variety of cellular activities
      pfam07728
      Location:1184 → 1320
      AAA_5; AAA domain (dynein-related subfamily)
      cl21455
      Location:352 → 468
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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