U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    iglr-3 Ig-like domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 171771, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    iglr-3
    Official Full Name
    Ig-like domain-containing protein
    Primary source
    WormBase:WBGene00021353
    Locus tag
    CELE_Y37E3.13
    See related
    AllianceGenome:WB:WBGene00021353
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in membrane. Orthologous to human LRRC24 (leucine rich repeat containing 24). [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See iglr-3 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    8
    Sequence:
    Chromosome: I; NC_003279.8 (2085605..2093796, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene IstB_IS21 domain-containing protein;Secreted protein;ethanolamine-phosphate cytidylyltransferase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Nuclear pore protein Neighboring gene Uncharacterized protein Neighboring gene Solute carrier family 40 member

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Ig-like domain-containing protein
    NP_001293349.1
    • Confirmed by transcript evidence
    NP_001293350.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      2085605..2093796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001306420.2 → NP_001293349.1  Ig-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293349.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      X5LX93
      Conserved Domains (4) summary
      COG4886
      Location:47 → 196
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:51 → 73
      LRR_RI; leucine-rich repeat [structural motif]
      cd00096
      Location:260 → 263
      Ig; Ig strand B [structural motif]
      pfam13927
      Location:243 → 319
      Ig_3; Immunoglobulin domain

    2. NM_001306421.3 → NP_001293350.1  Ig-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293350.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      X5M5V2
      Conserved Domains (4) summary
      sd00031
      Location:7 → 28
      LRR_1; leucine-rich repeat [structural motif]
      pfam13855
      Location:6 → 61
      LRR_8; Leucine rich repeat
      cd00096
      Location:125 → 128
      Ig; Ig strand B [structural motif]
      pfam13927
      Location:108 → 184
      Ig_3; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools