U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    vep-1 Myb-like domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 172168, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    vep-1
    Official Full Name
    Myb-like domain-containing protein
    Primary source
    WormBase:WBGene00015091
    Locus tag
    CELE_B0261.1
    See related
    AllianceGenome:WB:WBGene00015091
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable TFIIIC-class transcription factor complex binding activity. Predicted to be involved in RNA polymerase III preinitiation complex assembly. Predicted to be part of transcription factor TFIIIB complex. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 112. Orthologous to human BDP1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB). [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See vep-1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    9
    Sequence:
    Chromosome: I; NC_003279.8 (5263694..5268380)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Target of rapamycin homolog Neighboring gene Uncharacterized protein Neighboring gene DUF4015 domain-containing protein;DUF4968 domain-containing protein Neighboring gene DUF4377 domain-containing protein Neighboring gene Zf-tcix domain-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genomic identification and functional analysis of essential genes in Caenorhabditis elegans. Yu S, et al. BMC Genomics, 2018 Dec 4. PMID 30514206, Free PMC Article
    2. A gateway-compatible yeast one-hybrid system. Deplancke B, et al. Genome Res, 2004 Oct. PMID 15489331, Free PMC Article
    3. Defect-buffering cellular plasticity increases robustness of metazoan embryogenesis. Xiao L, et al. Cell Syst, 2022 Aug 17. PMID 35882226
    4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables TFIIIC-class transcription factor complex binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA polymerase III preinitiation complex assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of transcription factor TFIIIB complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Myb-like domain-containing protein
    NP_491553.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      5263694..5268380
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059152.9 → NP_491553.1  Myb-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491553.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O01441
      Conserved Domains (3) summary
      PTZ00121
      Location:339 → 504
      PTZ00121; MAEBL; Provisional
      COG5118
      Location:43 → 375
      BDP1; Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
      pfam15963
      Location:259 → 340
      Myb_DNA-bind_7; Myb DNA-binding like
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools