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    Mcpt-ps1 mast cell protease, pseudogene 1 [ Mus musculus (house mouse) ]

    Gene ID: 17223, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Mcpt-ps1provided by MGI
    Official Full Name
    mast cell protease, pseudogene 1provided by MGI
    Primary source
    MGI:MGI:102769
    See related
    Ensembl:ENSMUSG00000121428 AllianceGenome:MGI:102769
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mmcpy1; MMCP-(Y)1
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Mcpt-ps1 in Genome Data Viewer
    Location:
    14 C3; 14 28.19 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (56187266..56189828, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (55949809..55952371, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene KH and NYN domain containing Neighboring gene short chain dehydrogenase/reductase family 39U, member 1 Neighboring gene STARR-seq mESC enhancer starr_36786 Neighboring gene chymase 1, mast cell Neighboring gene chymase 2, mast cell Neighboring gene STARR-seq mESC enhancer starr_36788 Neighboring gene STARR-seq mESC enhancer starr_36789 Neighboring gene STARR-seq mESC enhancer starr_36790 Neighboring gene ubiquitin-conjugating enzyme E2, J2 homolog pseudogene Neighboring gene mast cell protease 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genes for mast-cell serine protease and their molecular evolution. Huang R, et al. Immunogenetics, 1994. PMID 7959952
    2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851

    GeneRIFs: Gene References Into Functions

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028284.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC163646, BY328253
      Related
      ENSMUST00000303580.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      56187266..56189828 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_019904.1: Suppressed sequence

      Description
      NG_019904.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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