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    bath-47 BTB and MATH domain-containing protein 47 [ Caenorhabditis elegans ]

    Gene ID: 173532, updated on 9-Dec-2024

    Summary

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    Official Symbol
    bath-47
    Official Full Name
    BTB and MATH domain-containing protein 47
    Primary source
    WormBase:WBGene00006464
    Locus tag
    CELE_T07H3.1
    See related
    AllianceGenome:WB:WBGene00006464
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in head and intestine. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See bath-47 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    8
    Sequence:
    Chromosome: II; NC_003280.10 (1601811..1604621)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene C-type LECtin Neighboring gene BTB domain-containing protein Neighboring gene MATH domain-containing protein Neighboring gene BTB domain-containing protein Neighboring gene ncRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    BTB and MATH domain-containing protein 47
    NP_494006.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      1601811..1604621
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_061605.5 → NP_494006.2  BTB and MATH domain-containing protein 47 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_494006.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O76612
      Conserved Domains (3) summary
      smart00225
      Location:17 → 109
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:8 → 106
      BTB; BTB/POZ domain
      cl02446
      Location:171 → 280
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O76612.3

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