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    C01F1.6 ANK_REP_REGION domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173761, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C01F1.6
    Official Full Name
    ANK_REP_REGION domain-containing protein
    Primary source
    WormBase:WBGene00015301
    Locus tag
    CELE_C01F1.6
    See related
    AllianceGenome:WB:WBGene00015301
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable signaling receptor binding activity. Predicted to be involved in protein retention in ER lumen. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in cytoplasm. Is expressed in head; intestine; and nervous system. Orthologous to human ANKRD13C (ankyrin repeat domain 13C). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C01F1.6 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    5
    Sequence:
    Chromosome: II; NC_003280.10 (4282182..4288211, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Peptidase M12A domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene NAD(P)-bd_dom domain-containing protein;NAD(P)-binding domain-containing protein Neighboring gene Thioredoxin domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables signaling receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein retention in ER lumen IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ANK_REP_REGION domain-containing protein
    NP_494753.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      4282182..4288211 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062352.9 → NP_494753.3  ANK_REP_REGION domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_494753.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q17555
      Conserved Domains (3) summary
      sd00045
      Location:27 → 54
      ANK; ANK repeat [structural motif]
      pfam11904
      Location:172 → 447
      GPCR_chapero_1; GPCR-chaperone
      pfam12796
      Location:28 → 112
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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